miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 158632 0.66 0.982339
Target:  5'- uGGGGUCUGCgcaCCgAGACgGCAcg--CCa -3'
miRNA:   3'- -CCCCGGACG---GGgUUUGgUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 4085 0.66 0.982339
Target:  5'- -cGGCCuccUGCCCCgAGACCgGCucg-UCCg -3'
miRNA:   3'- ccCCGG---ACGGGG-UUUGG-UGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 91749 0.66 0.982339
Target:  5'- cGGGGCCUcGgCCCuGGCCuc---UUCCc -3'
miRNA:   3'- -CCCCGGA-CgGGGuUUGGuguuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 94892 0.66 0.982339
Target:  5'- -cGGCCcugccuccgGCCCCAucCCGCGAGccCCa -3'
miRNA:   3'- ccCCGGa--------CGGGGUuuGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 84253 0.66 0.982137
Target:  5'- -uGGCCUGCCCgcgggcaUAGGCCAgauCAAucUCCu -3'
miRNA:   3'- ccCCGGACGGG-------GUUUGGU---GUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 158364 0.66 0.981934
Target:  5'- gGGGGCCUGgCCaacggggugcGCCGCuacg-CCa -3'
miRNA:   3'- -CCCCGGACgGGguu-------UGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 162951 0.66 0.980243
Target:  5'- aGGGCCggGCCCCGGccguguGCCugAAc---- -3'
miRNA:   3'- cCCCGGa-CGGGGUU------UGGugUUuaagg -5'
33288 3' -52.8 NC_007605.1 + 160198 0.66 0.980243
Target:  5'- aGGGCgCgGUCCCGGGCC-CGGGgcggCCg -3'
miRNA:   3'- cCCCG-GaCGGGGUUUGGuGUUUaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 153246 0.66 0.980243
Target:  5'- gGGGGCCUGagacuggaCCCu-ACUACu-AUUCUc -3'
miRNA:   3'- -CCCCGGACg-------GGGuuUGGUGuuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 53381 0.66 0.980024
Target:  5'- uGGGGCaauggaGCCCCGAcccggcgGgCACAAuUUCUg -3'
miRNA:   3'- -CCCCGga----CGGGGUU-------UgGUGUUuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 3745 0.66 0.980024
Target:  5'- uGGGGCUccucccuUGCCCUAucguACCugGGAUc-- -3'
miRNA:   3'- -CCCCGG-------ACGGGGUu---UGGugUUUAagg -5'
33288 3' -52.8 NC_007605.1 + 151109 0.66 0.980024
Target:  5'- --cGCCUGCCCCGucccACCcCAAGgucaugcUUCCu -3'
miRNA:   3'- cccCGGACGGGGUu---UGGuGUUU-------AAGG- -5'
33288 3' -52.8 NC_007605.1 + 96932 0.66 0.978901
Target:  5'- gGGGGCCUGCgcgguggagaCCCGGAUgaugaugacugacuaCugGGAcUCCu -3'
miRNA:   3'- -CCCCGGACG----------GGGUUUG---------------GugUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 114210 0.66 0.977969
Target:  5'- cGGGCCUGgCCaCGguGGCUA-GGGUUCCa -3'
miRNA:   3'- cCCCGGACgGG-GU--UUGGUgUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 162802 0.66 0.977969
Target:  5'- uGGcGGCC-GCCCCc-GCCACGuagcugCCc -3'
miRNA:   3'- -CC-CCGGaCGGGGuuUGGUGUuuaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 53430 0.66 0.977969
Target:  5'- cGGGUCggugugGCCCCuGGCCugGGugaCCa -3'
miRNA:   3'- cCCCGGa-----CGGGGuUUGGugUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 54012 0.66 0.977969
Target:  5'- aGGGUCUGgcucUCCCGGACCuGCuc-UUCCa -3'
miRNA:   3'- cCCCGGAC----GGGGUUUGG-UGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 98378 0.66 0.977969
Target:  5'- aGGGGUCgcaaaagcgGgCCCAGGCCAUgcacaugUCCu -3'
miRNA:   3'- -CCCCGGa--------CgGGGUUUGGUGuuua---AGG- -5'
33288 3' -52.8 NC_007605.1 + 62278 0.66 0.977969
Target:  5'- uGGuGGUCUcuuucaccGCCCCGAGUCACu--UUCCa -3'
miRNA:   3'- -CC-CCGGA--------CGGGGUUUGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 60940 0.66 0.977969
Target:  5'- gGGGGCUgucGUCCCAcgaCGCAG--UCCu -3'
miRNA:   3'- -CCCCGGa--CGGGGUuugGUGUUuaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.