Results 41 - 45 of 45 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 33288 | 5' | -55.7 | NC_007605.1 | + | 134883 | 0.71 | 0.680959 |
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Target: 5'- aAC-UGGCUCAGcuuggggccaCCGGGgAGGCCAGg -3' miRNA: 3'- -UGuAUCGAGUCua--------GGUCCgUCCGGUC- -5' |
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| 33288 | 5' | -55.7 | NC_007605.1 | + | 127122 | 0.71 | 0.680959 |
|
Target: 5'- gAUAcAGCUgGGAUCCAGGCgcaggagggAGGCgCAGu -3' miRNA: 3'- -UGUaUCGAgUCUAGGUCCG---------UCCG-GUC- -5' |
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| 33288 | 5' | -55.7 | NC_007605.1 | + | 132386 | 0.71 | 0.62934 |
|
Target: 5'- gACAUuuucGC-CAGccgCCGGGCGGGCCGGc -3' miRNA: 3'- -UGUAu---CGaGUCua-GGUCCGUCCGGUC- -5' |
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| 33288 | 5' | -55.7 | NC_007605.1 | + | 110310 | 0.77 | 0.347279 |
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Target: 5'- aGCcgAGCgacugCAGAUCCAGGCgaaGGGCCGu -3' miRNA: 3'- -UGuaUCGa----GUCUAGGUCCG---UCCGGUc -5' |
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| 33288 | 5' | -55.7 | NC_007605.1 | + | 47814 | 1.07 | 0.003559 |
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Target: 5'- cACAUAGCUCAGAUCCAGGCAGGCCAGc -3' miRNA: 3'- -UGUAUCGAGUCUAGGUCCGUCCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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