miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33289 3' -61.4 NC_007605.1 + 31335 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 32182 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 34404 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 35251 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 95094 0.68 0.530984
Target:  5'- gGGCUCGCgggauggGGcCG-GAGGCaGGGCCgAa -3'
miRNA:   3'- -UCGAGCGa------CC-GCaCUCUGaCCCGGgU- -5'
33289 3' -61.4 NC_007605.1 + 29125 0.67 0.599126
Target:  5'- gGGCcuguccacCGUgggaggGGUGgacGAGGCUGGGCCCGg -3'
miRNA:   3'- -UCGa-------GCGa-----CCGCa--CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 52961 0.67 0.62879
Target:  5'- uAGCUUGggGGCGUccGGCUGGGgUCAg -3'
miRNA:   3'- -UCGAGCgaCCGCAcuCUGACCCgGGU- -5'
33289 3' -61.4 NC_007605.1 + 74668 0.67 0.62879
Target:  5'- cGGaC-CGCUGGCGagccGAGAuagauCUGGGCCUg -3'
miRNA:   3'- -UC-GaGCGACCGCa---CUCU-----GACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 161125 0.66 0.696767
Target:  5'- cGCUCGggacuuuCUGGagggaGUGuGGGgUGGGCCCGg -3'
miRNA:   3'- uCGAGC-------GACCg----CAC-UCUgACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 14028 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 17097 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 20165 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 23234 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 26303 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 29372 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 32441 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 85469 0.66 0.668341
Target:  5'- aGGa--GgUGGCGUGGGAgUGGGCgCCc -3'
miRNA:   3'- -UCgagCgACCGCACUCUgACCCG-GGu -5'
33289 3' -61.4 NC_007605.1 + 131503 0.66 0.658475
Target:  5'- gAGCUUGCUGGUuaccGAGuCUGGuGCCa- -3'
miRNA:   3'- -UCGAGCGACCGca--CUCuGACC-CGGgu -5'
33289 3' -61.4 NC_007605.1 + 85421 0.66 0.64859
Target:  5'- gGGCg-GCaccugaggaggUGGCGUGGGAgUGGGCgCCc -3'
miRNA:   3'- -UCGagCG-----------ACCGCACUCUgACCCG-GGu -5'
33289 3' -61.4 NC_007605.1 + 13363 0.66 0.697741
Target:  5'- gGGuCUCGgUGGgGcuGGACUugaGGGCCCAa -3'
miRNA:   3'- -UC-GAGCgACCgCacUCUGA---CCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.