miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33289 3' -61.4 NC_007605.1 + 52961 0.67 0.62879
Target:  5'- uAGCUUGggGGCGUccGGCUGGGgUCAg -3'
miRNA:   3'- -UCGAGCgaCCGCAcuCUGACCCgGGU- -5'
33289 3' -61.4 NC_007605.1 + 74668 0.67 0.62879
Target:  5'- cGGaC-CGCUGGCGagccGAGAuagauCUGGGCCUg -3'
miRNA:   3'- -UC-GaGCGACCGCa---CUCU-----GACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 29125 0.67 0.599126
Target:  5'- gGGCcuguccacCGUgggaggGGUGgacGAGGCUGGGCCCGg -3'
miRNA:   3'- -UCGa-------GCGa-----CCGCa--CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 31335 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 22976 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 35251 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 34404 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 26045 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 32182 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 25197 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 12922 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 22128 0.68 0.559919
Target:  5'- cGGCUgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAgCGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 19907 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 19060 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 16838 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 15991 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 13769 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 28266 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 95094 0.68 0.530984
Target:  5'- gGGCUCGCgggauggGGcCG-GAGGCaGGGCCgAa -3'
miRNA:   3'- -UCGAGCGa------CC-GCaCUCUGaCCCGGgU- -5'
33289 3' -61.4 NC_007605.1 + 140631 0.69 0.52526
Target:  5'- gAGCUCGggGGCGgccGGGuggcccaccggguccGCUGGGUCCGc -3'
miRNA:   3'- -UCGAGCgaCCGCa--CUC---------------UGACCCGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.