Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33289 | 5' | -53 | NC_007605.1 | + | 59767 | 0.66 | 0.976292 |
Target: 5'- -cCGGGACCuGUCACcaccgccccACGGCag-GUGGc -3' miRNA: 3'- gaGCCCUGG-CAGUG---------UGUCGaaaCACU- -5' |
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33289 | 5' | -53 | NC_007605.1 | + | 168801 | 0.67 | 0.964698 |
Target: 5'- --gGGGGCCGUCGCG-GGCccgGUGGg -3' miRNA: 3'- gagCCCUGGCAGUGUgUCGaaaCACU- -5' |
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33289 | 5' | -53 | NC_007605.1 | + | 63545 | 0.68 | 0.949614 |
Target: 5'- -gCGGGGCUGUCGUACAGCaggUUGg-- -3' miRNA: 3'- gaGCCCUGGCAGUGUGUCGa--AACacu -5' |
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33289 | 5' | -53 | NC_007605.1 | + | 135304 | 0.69 | 0.932816 |
Target: 5'- --aGGGGCCGUCugugcauguguguggGCGCAGCUUg--GAc -3' miRNA: 3'- gagCCCUGGCAG---------------UGUGUCGAAacaCU- -5' |
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33289 | 5' | -53 | NC_007605.1 | + | 3188 | 0.69 | 0.919867 |
Target: 5'- gCUCGaGGGCCGUCuGCACGGCcgccUUGcccaUGAa -3' miRNA: 3'- -GAGC-CCUGGCAG-UGUGUCGa---AAC----ACU- -5' |
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33289 | 5' | -53 | NC_007605.1 | + | 54146 | 0.71 | 0.851219 |
Target: 5'- -gCGGGGCUuUCACACGGCUcUG-GAg -3' miRNA: 3'- gaGCCCUGGcAGUGUGUCGAaACaCU- -5' |
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33289 | 5' | -53 | NC_007605.1 | + | 48350 | 1.09 | 0.005953 |
Target: 5'- gCUCGGGACCGUCACACAGCUUUGUGAg -3' miRNA: 3'- -GAGCCCUGGCAGUGUGUCGAAACACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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