miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3329 5' -45 NC_001547.1 + 1090 1.17 0.000574
Target:  5'- uGGUAUAAUGGCCACGGAUAUAUCACCu -3'
miRNA:   3'- -CCAUAUUACCGGUGCCUAUAUAGUGG- -5'
3329 5' -45 NC_001547.1 + 1087 0.71 0.61833
Target:  5'- -aUAUGGUGGCCG-GGAUGUAcgugCACa -3'
miRNA:   3'- ccAUAUUACCGGUgCCUAUAUa---GUGg -5'
3329 5' -45 NC_001547.1 + 6856 0.67 0.830072
Target:  5'- cGGUAc--UGGagACGGAUAUcgCAUCa -3'
miRNA:   3'- -CCAUauuACCggUGCCUAUAuaGUGG- -5'
3329 5' -45 NC_001547.1 + 5178 0.66 0.870729
Target:  5'- aGGUGUuaucagcuguaGAUGGUgACGG---UGUCGCUa -3'
miRNA:   3'- -CCAUA-----------UUACCGgUGCCuauAUAGUGG- -5'
3329 5' -45 NC_001547.1 + 2845 0.66 0.880036
Target:  5'- -uUGUGA-GGCCGCGGcUGUcAUUACUu -3'
miRNA:   3'- ccAUAUUaCCGGUGCCuAUA-UAGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.