miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33290 3' -62 NC_007605.1 + 4407 0.67 0.622568
Target:  5'- gCCaUCCCCgcaACGCaCCgcaaucaggagaCUGCCCGUCUUc -3'
miRNA:   3'- -GG-AGGGGa--UGCG-GG------------GGCGGGCAGAAa -5'
33290 3' -62 NC_007605.1 + 154725 0.67 0.611855
Target:  5'- uCCUCCuUCUugGCCCCCaguagguGCCUGgCUa- -3'
miRNA:   3'- -GGAGG-GGAugCGGGGG-------CGGGCaGAaa -5'
33290 3' -62 NC_007605.1 + 52309 0.67 0.609908
Target:  5'- gCUCCCCaggGCGgagggacucgagguCCCCCGCgaaaccCCGUCUUc -3'
miRNA:   3'- gGAGGGGa--UGC--------------GGGGGCG------GGCAGAAa -5'
33290 3' -62 NC_007605.1 + 169755 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 170292 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 170815 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 171352 0.67 0.603101
Target:  5'- cCCgaCCCCc-CGCCgCCCGCCCGcCg-- -3'
miRNA:   3'- -GGa-GGGGauGCGG-GGGCGGGCaGaaa -5'
33290 3' -62 NC_007605.1 + 171797 0.68 0.574062
Target:  5'- aCC-CCCCcAUGCCCCCGCCa------ -3'
miRNA:   3'- -GGaGGGGaUGCGGGGGCGGgcagaaa -5'
33290 3' -62 NC_007605.1 + 81381 0.68 0.574062
Target:  5'- gCC-CCaCCUACGCCCuuGCCCc----- -3'
miRNA:   3'- -GGaGG-GGAUGCGGGggCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 14414 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 23621 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 32828 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 29759 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 17483 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 20552 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 26690 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 81873 0.68 0.55488
Target:  5'- gCCUCCa--ACGCUCCCGCgCgCGUCUa- -3'
miRNA:   3'- -GGAGGggaUGCGGGGGCG-G-GCAGAaa -5'
33290 3' -62 NC_007605.1 + 61428 0.68 0.55488
Target:  5'- cCCUCCCCUGuaaGCCCCCccuacucCCCGg---- -3'
miRNA:   3'- -GGAGGGGAUg--CGGGGGc------GGGCagaaa -5'
33290 3' -62 NC_007605.1 + 59874 0.68 0.545359
Target:  5'- cCCUCaCCCgugggacaaACGCCCCCGCCauUCc-- -3'
miRNA:   3'- -GGAG-GGGa--------UGCGGGGGCGGgcAGaaa -5'
33290 3' -62 NC_007605.1 + 154103 0.69 0.526481
Target:  5'- cCCUCCCCggACGCCUgggCGCCCcUCa-- -3'
miRNA:   3'- -GGAGGGGa-UGCGGGg--GCGGGcAGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.