miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 154827 0.67 0.671096
Target:  5'- cUGCGUGcAGgACuCGGCCCUGGUCAUg -3'
miRNA:   3'- cACGUAC-UCgUG-GUCGGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 71545 0.67 0.691215
Target:  5'- -aGCAaGAGCGCCcagAGCCCCAaggGCCc-- -3'
miRNA:   3'- caCGUaCUCGUGG---UCGGGGU---CGGugu -5'
33291 3' -59.2 NC_007605.1 + 12742 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 18880 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 15811 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 150919 0.67 0.671096
Target:  5'- -gGUcgGcuGGCACCAGgCCUGGCCAUg -3'
miRNA:   3'- caCGuaC--UCGUGGUCgGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 160745 0.67 0.71114
Target:  5'- cGUGCAUGcAGCGCCcuGUCCCuggAGCUgguGCAc -3'
miRNA:   3'- -CACGUAC-UCGUGGu-CGGGG---UCGG---UGU- -5'
33291 3' -59.2 NC_007605.1 + 90614 0.67 0.681175
Target:  5'- -gGCucugGcAGCACCGGCCaCAGCaCACAa -3'
miRNA:   3'- caCGua--C-UCGUGGUCGGgGUCG-GUGU- -5'
33291 3' -59.2 NC_007605.1 + 111959 0.67 0.721008
Target:  5'- -aGCAgaauaGGGCcCCuuuuGCCCCGuGCCGCAg -3'
miRNA:   3'- caCGUa----CUCGuGGu---CGGGGU-CGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 85655 0.67 0.71114
Target:  5'- gGUGCcgGAcccuggugaagGCuGCCAGCCCgCAGCgGCu -3'
miRNA:   3'- -CACGuaCU-----------CG-UGGUCGGG-GUCGgUGu -5'
33291 3' -59.2 NC_007605.1 + 61452 0.67 0.721008
Target:  5'- -gGCA--GGCcCCGGCCCCGGCUcCGg -3'
miRNA:   3'- caCGUacUCGuGGUCGGGGUCGGuGU- -5'
33291 3' -59.2 NC_007605.1 + 164428 0.67 0.721008
Target:  5'- uGUGUAgcacAGCACCAcCCUgAGCCGCGa -3'
miRNA:   3'- -CACGUac--UCGUGGUcGGGgUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 33919 0.67 0.691215
Target:  5'- -gGC-UGGGCugGCCGGCCCgGGUCugGg -3'
miRNA:   3'- caCGuACUCG--UGGUCGGGgUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 103066 0.67 0.721008
Target:  5'- -aGC---GGCGUCAGCCCCcGCCGCAg -3'
miRNA:   3'- caCGuacUCGUGGUCGGGGuCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 165954 0.67 0.681175
Target:  5'- gGUGCcaAUGGGCGCgGGUCCCccuAGCCcCGg -3'
miRNA:   3'- -CACG--UACUCGUGgUCGGGG---UCGGuGU- -5'
33291 3' -59.2 NC_007605.1 + 2595 0.67 0.721008
Target:  5'- cUGUuuAUGAGaCGCCAGCacCCCGGCCu-- -3'
miRNA:   3'- cACG--UACUC-GUGGUCG--GGGUCGGugu -5'
33291 3' -59.2 NC_007605.1 + 160534 0.68 0.620395
Target:  5'- -aGCAgGuGCACCAGCUCCAGggACAg -3'
miRNA:   3'- caCGUaCuCGUGGUCGGGGUCggUGU- -5'
33291 3' -59.2 NC_007605.1 + 82019 0.68 0.647808
Target:  5'- -aGUAUGGGCccgguaccuccgguACCGGCaacaCAGCCACAg -3'
miRNA:   3'- caCGUACUCG--------------UGGUCGgg--GUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 164143 0.68 0.629533
Target:  5'- cUGCAUGAuGC-CCAagguaucGCCCCGGCCuccCAg -3'
miRNA:   3'- cACGUACU-CGuGGU-------CGGGGUCGGu--GU- -5'
33291 3' -59.2 NC_007605.1 + 110478 0.68 0.620395
Target:  5'- -gGCGauaGAGCuGCCGGCCCUuagaagacuuuAGCCGCAc -3'
miRNA:   3'- caCGUa--CUCG-UGGUCGGGG-----------UCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.