Results 81 - 97 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33291 | 3' | -59.2 | NC_007605.1 | + | 61452 | 0.67 | 0.721008 |
Target: 5'- -gGCA--GGCcCCGGCCCCGGCUcCGg -3' miRNA: 3'- caCGUacUCGuGGUCGGGGUCGGuGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 164428 | 0.67 | 0.721008 |
Target: 5'- uGUGUAgcacAGCACCAcCCUgAGCCGCGa -3' miRNA: 3'- -CACGUac--UCGUGGUcGGGgUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 65216 | 0.66 | 0.729825 |
Target: 5'- uGUGCGccgagGuGCugCAGCCCUcgaggaagucuguGGCCACc -3' miRNA: 3'- -CACGUa----CuCGugGUCGGGG-------------UCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 40176 | 0.66 | 0.7308 |
Target: 5'- -aGCAgggaggGGGCGucccgggaccCCAGCCCCcAGCCgGCAa -3' miRNA: 3'- caCGUa-----CUCGU----------GGUCGGGG-UCGG-UGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 159713 | 0.66 | 0.7308 |
Target: 5'- -cGCAgaaGAGcCGCUccguGGCCCCgggAGCCACGg -3' miRNA: 3'- caCGUa--CUC-GUGG----UCGGGG---UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 159684 | 0.66 | 0.7308 |
Target: 5'- -cGCGUcgcccgagGAGCugUAGaCCCC-GCCGCAg -3' miRNA: 3'- caCGUA--------CUCGugGUC-GGGGuCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 50693 | 0.66 | 0.740509 |
Target: 5'- gGUGCAUuGGCACCGcGCCCCcaaaaaaCGCAa -3' miRNA: 3'- -CACGUAcUCGUGGU-CGGGGucg----GUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 136689 | 0.66 | 0.750125 |
Target: 5'- -gGCcgGGGCgACC-GCUCCGGCCcCAg -3' miRNA: 3'- caCGuaCUCG-UGGuCGGGGUCGGuGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 67755 | 0.66 | 0.759638 |
Target: 5'- -gGCAgaaucaccaGAGC-CCagaggaGGCCCCGGCCGCc -3' miRNA: 3'- caCGUa--------CUCGuGG------UCGGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 45185 | 0.66 | 0.759638 |
Target: 5'- cUGCGaaUGGuCGCCAGCCuCCGGUCugGu -3' miRNA: 3'- cACGU--ACUcGUGGUCGG-GGUCGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 68286 | 0.66 | 0.769041 |
Target: 5'- -gGCGgcGGCGCuUAGCCUCuGCCGCAu -3' miRNA: 3'- caCGUacUCGUG-GUCGGGGuCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 160632 | 0.66 | 0.769041 |
Target: 5'- -gGCGuUGcGCACCA-CCgCAGCCACGu -3' miRNA: 3'- caCGU-ACuCGUGGUcGGgGUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 47853 | 0.66 | 0.769041 |
Target: 5'- -aGC-UGGGgGCCuGCCCCAaaCCACAa -3' miRNA: 3'- caCGuACUCgUGGuCGGGGUc-GGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 42549 | 0.66 | 0.769041 |
Target: 5'- -gGCAUGcauGCACCAGgCCauccaGGCCAa- -3' miRNA: 3'- caCGUACu--CGUGGUCgGGg----UCGGUgu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 107982 | 0.66 | 0.769041 |
Target: 5'- cGUGCGcGAGgGCCuaGGCCUCGGCuCugAc -3' miRNA: 3'- -CACGUaCUCgUGG--UCGGGGUCG-GugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 127955 | 0.66 | 0.778323 |
Target: 5'- -aGC-UGGGCAau-GCCCCcGCCGCGc -3' miRNA: 3'- caCGuACUCGUgguCGGGGuCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 91528 | 0.66 | 0.778323 |
Target: 5'- -cGCc--AGCcCCGguGCCCCAGCCACu -3' miRNA: 3'- caCGuacUCGuGGU--CGGGGUCGGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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