Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33291 | 3' | -59.2 | NC_007605.1 | + | 161390 | 0.68 | 0.650852 |
Target: 5'- --cCGUGaAGCGCCGGaCCCaAGCCGCGa -3' miRNA: 3'- cacGUAC-UCGUGGUC-GGGgUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 82019 | 0.68 | 0.647808 |
Target: 5'- -aGUAUGGGCccgguaccuccgguACCGGCaacaCAGCCACAg -3' miRNA: 3'- caCGUACUCG--------------UGGUCGgg--GUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 123541 | 0.68 | 0.637658 |
Target: 5'- uGUGCAccggcuaauggUGGGUAaccugccgacucccCUGGCCCCAGCUGCAu -3' miRNA: 3'- -CACGU-----------ACUCGU--------------GGUCGGGGUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 164143 | 0.68 | 0.629533 |
Target: 5'- cUGCAUGAuGC-CCAagguaucGCCCCGGCCuccCAg -3' miRNA: 3'- cACGUACU-CGuGGU-------CGGGGUCGGu--GU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 81925 | 0.68 | 0.620395 |
Target: 5'- -gGCAccugGGGUACCGGCgaUgCAGCCACAg -3' miRNA: 3'- caCGUa---CUCGUGGUCG--GgGUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 150141 | 0.68 | 0.620395 |
Target: 5'- cUGCAUGGGCuCCuccgggguaAGCUUCGGCCAUg -3' miRNA: 3'- cACGUACUCGuGG---------UCGGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 160534 | 0.68 | 0.620395 |
Target: 5'- -aGCAgGuGCACCAGCUCCAGggACAg -3' miRNA: 3'- caCGUaCuCGUGGUCGGGGUCggUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 110478 | 0.68 | 0.620395 |
Target: 5'- -gGCGauaGAGCuGCCGGCCCUuagaagacuuuAGCCGCAc -3' miRNA: 3'- caCGUa--CUCG-UGGUCGGGG-----------UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 12153 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 135264 | 0.68 | 0.61025 |
Target: 5'- -cGCA-GGGCGCCGGaCCUgAGCCAg- -3' miRNA: 3'- caCGUaCUCGUGGUC-GGGgUCGGUgu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 15222 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 18291 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 21360 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 24429 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 27498 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 30567 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 33636 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 51552 | 0.68 | 0.609237 |
Target: 5'- -gGguUGAGUacaucggucgGCCaucgugaGGCCCCGGCCGCGu -3' miRNA: 3'- caCguACUCG----------UGG-------UCGGGGUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 159320 | 0.69 | 0.590016 |
Target: 5'- -cGCAUGcGgGCCAGCuCCCAGuagaCCACGu -3' miRNA: 3'- caCGUACuCgUGGUCG-GGGUC----GGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 50613 | 0.69 | 0.579941 |
Target: 5'- -aGCgGUGGGUGCCAGgCCCgugccaaaGGCCACGg -3' miRNA: 3'- caCG-UACUCGUGGUCgGGG--------UCGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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