miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 40176 0.66 0.7308
Target:  5'- -aGCAgggaggGGGCGucccgggaccCCAGCCCCcAGCCgGCAa -3'
miRNA:   3'- caCGUa-----CUCGU----------GGUCGGGG-UCGG-UGU- -5'
33291 3' -59.2 NC_007605.1 + 42549 0.66 0.769041
Target:  5'- -gGCAUGcauGCACCAGgCCauccaGGCCAa- -3'
miRNA:   3'- caCGUACu--CGUGGUCgGGg----UCGGUgu -5'
33291 3' -59.2 NC_007605.1 + 45185 0.66 0.759638
Target:  5'- cUGCGaaUGGuCGCCAGCCuCCGGUCugGu -3'
miRNA:   3'- cACGU--ACUcGUGGUCGG-GGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 47853 0.66 0.769041
Target:  5'- -aGC-UGGGgGCCuGCCCCAaaCCACAa -3'
miRNA:   3'- caCGuACUCgUGGuCGGGGUc-GGUGU- -5'
33291 3' -59.2 NC_007605.1 + 49609 1.07 0.001646
Target:  5'- uGUGCAUGAGCACCAGCCCCAGCCACAc -3'
miRNA:   3'- -CACGUACUCGUGGUCGGGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 50613 0.69 0.579941
Target:  5'- -aGCgGUGGGUGCCAGgCCCgugccaaaGGCCACGg -3'
miRNA:   3'- caCG-UACUCGUGGUCgGGG--------UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 50693 0.66 0.740509
Target:  5'- gGUGCAUuGGCACCGcGCCCCcaaaaaaCGCAa -3'
miRNA:   3'- -CACGUAcUCGUGGU-CGGGGucg----GUGU- -5'
33291 3' -59.2 NC_007605.1 + 51006 0.7 0.517562
Target:  5'- -gGCAucuuuaacgacuuuUGGGCuCCAGCCCCAGgaCACAc -3'
miRNA:   3'- caCGU--------------ACUCGuGGUCGGGGUCg-GUGU- -5'
33291 3' -59.2 NC_007605.1 + 51552 0.68 0.609237
Target:  5'- -gGguUGAGUacaucggucgGCCaucgugaGGCCCCGGCCGCGu -3'
miRNA:   3'- caCguACUCG----------UGG-------UCGGGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 60499 0.69 0.549962
Target:  5'- uGUGCcgGGaCGCCgccgccaggugGGCCCUGGCCACGg -3'
miRNA:   3'- -CACGuaCUcGUGG-----------UCGGGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 61452 0.67 0.721008
Target:  5'- -gGCA--GGCcCCGGCCCCGGCUcCGg -3'
miRNA:   3'- caCGUacUCGuGGUCGGGGUCGGuGU- -5'
33291 3' -59.2 NC_007605.1 + 62384 0.74 0.329957
Target:  5'- cUGCA-GGGCAgggUCAGCCCaCGGCCGCGg -3'
miRNA:   3'- cACGUaCUCGU---GGUCGGG-GUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 65216 0.66 0.729825
Target:  5'- uGUGCGccgagGuGCugCAGCCCUcgaggaagucuguGGCCACc -3'
miRNA:   3'- -CACGUa----CuCGugGUCGGGG-------------UCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 67755 0.66 0.759638
Target:  5'- -gGCAgaaucaccaGAGC-CCagaggaGGCCCCGGCCGCc -3'
miRNA:   3'- caCGUa--------CUCGuGG------UCGGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 68286 0.66 0.769041
Target:  5'- -gGCGgcGGCGCuUAGCCUCuGCCGCAu -3'
miRNA:   3'- caCGUacUCGUG-GUCGGGGuCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 70802 0.72 0.410048
Target:  5'- -aGCAuaUGcGGCAgUAGCCCCAGCCuACAu -3'
miRNA:   3'- caCGU--AC-UCGUgGUCGGGGUCGG-UGU- -5'
33291 3' -59.2 NC_007605.1 + 71545 0.67 0.691215
Target:  5'- -aGCAaGAGCGCCcagAGCCCCAaggGCCc-- -3'
miRNA:   3'- caCGUaCUCGUGG---UCGGGGU---CGGugu -5'
33291 3' -59.2 NC_007605.1 + 71821 0.68 0.660985
Target:  5'- aUGCccccGGCuccaCGGCCCCGGCCACu -3'
miRNA:   3'- cACGuac-UCGug--GUCGGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 73400 0.72 0.427458
Target:  5'- -cGCGcGAGCuccACCAGCUCCcgGGCCACGu -3'
miRNA:   3'- caCGUaCUCG---UGGUCGGGG--UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 73683 0.7 0.530241
Target:  5'- -cGCAUgGAGCccCCGGCCCCAuaCACGu -3'
miRNA:   3'- caCGUA-CUCGu-GGUCGGGGUcgGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.