Results 61 - 80 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33291 | 3' | -59.2 | NC_007605.1 | + | 39592 | 0.71 | 0.48218 |
Target: 5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 39467 | 0.71 | 0.48218 |
Target: 5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 39342 | 0.71 | 0.48218 |
Target: 5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 39217 | 0.71 | 0.48218 |
Target: 5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 39092 | 0.71 | 0.436326 |
Target: 5'- cUGCcccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua--CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 38968 | 0.71 | 0.48218 |
Target: 5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 38843 | 0.71 | 0.48218 |
Target: 5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 38718 | 0.71 | 0.48218 |
Target: 5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 38593 | 0.71 | 0.48218 |
Target: 5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 38468 | 0.71 | 0.48218 |
Target: 5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3' miRNA: 3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 34958 | 0.75 | 0.287726 |
Target: 5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3' miRNA: 3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 34224 | 0.67 | 0.671096 |
Target: 5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3' miRNA: 3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 33919 | 0.67 | 0.691215 |
Target: 5'- -gGC-UGGGCugGCCGGCCCgGGUCugGg -3' miRNA: 3'- caCGuACUCG--UGGUCGGGgUCGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 33636 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 31890 | 0.75 | 0.287726 |
Target: 5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3' miRNA: 3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 31155 | 0.67 | 0.671096 |
Target: 5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3' miRNA: 3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 30567 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 28821 | 0.75 | 0.287726 |
Target: 5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3' miRNA: 3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 28086 | 0.67 | 0.671096 |
Target: 5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3' miRNA: 3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 27498 | 0.68 | 0.61025 |
Target: 5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3' miRNA: 3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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