miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 13476 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 136497 0.7 0.540071
Target:  5'- -gGCcgGAGCGgUcGCCCCGGCCGg- -3'
miRNA:   3'- caCGuaCUCGUgGuCGGGGUCGGUgu -5'
33291 3' -59.2 NC_007605.1 + 21949 0.69 0.559908
Target:  5'- -aGCc-GAGCgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG-UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 159320 0.69 0.590016
Target:  5'- -cGCAUGcGgGCCAGCuCCCAGuagaCCACGu -3'
miRNA:   3'- caCGUACuCgUGGUCG-GGGUC----GGUGU- -5'
33291 3' -59.2 NC_007605.1 + 160534 0.68 0.620395
Target:  5'- -aGCAgGuGCACCAGCUCCAGggACAg -3'
miRNA:   3'- caCGUaCuCGUGGUCGGGGUCggUGU- -5'
33291 3' -59.2 NC_007605.1 + 150141 0.68 0.620395
Target:  5'- cUGCAUGGGCuCCuccgggguaAGCUUCGGCCAUg -3'
miRNA:   3'- cACGUACUCGuGG---------UCGGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 81925 0.68 0.620395
Target:  5'- -gGCAccugGGGUACCGGCgaUgCAGCCACAg -3'
miRNA:   3'- caCGUa---CUCGUGGUCG--GgGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 33636 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 30567 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 27498 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 24429 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 51552 0.68 0.609237
Target:  5'- -gGguUGAGUacaucggucgGCCaucgugaGGCCCCGGCCGCGu -3'
miRNA:   3'- caCguACUCG----------UGG-------UCGGGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 12153 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 15222 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 18291 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 21360 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 91528 0.66 0.778323
Target:  5'- -cGCc--AGCcCCGguGCCCCAGCCACu -3'
miRNA:   3'- caCGuacUCGuGGU--CGGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39967 0.79 0.156468
Target:  5'- gGUGCAgugGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- -CACGUa--CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 100319 0.74 0.30829
Target:  5'- aUGCccGAGUACUGGCuccCCCGGCCGCAa -3'
miRNA:   3'- cACGuaCUCGUGGUCG---GGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 62384 0.74 0.329957
Target:  5'- cUGCA-GGGCAgggUCAGCCCaCGGCCGCGg -3'
miRNA:   3'- cACGUaCUCGU---GGUCGGG-GUCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.