Results 61 - 80 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33291 | 3' | -59.2 | NC_007605.1 | + | 73400 | 0.72 | 0.427458 |
Target: 5'- -cGCGcGAGCuccACCAGCUCCcgGGCCACGu -3' miRNA: 3'- caCGUaCUCG---UGGUCGGGG--UCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 31890 | 0.75 | 0.287726 |
Target: 5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3' miRNA: 3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 28821 | 0.75 | 0.287726 |
Target: 5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3' miRNA: 3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 25752 | 0.75 | 0.287726 |
Target: 5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3' miRNA: 3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 150141 | 0.68 | 0.620395 |
Target: 5'- cUGCAUGGGCuCCuccgggguaAGCUUCGGCCAUg -3' miRNA: 3'- cACGUACUCGuGG---------UCGGGGUCGGUGu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 160534 | 0.68 | 0.620395 |
Target: 5'- -aGCAgGuGCACCAGCUCCAGggACAg -3' miRNA: 3'- caCGUaCuCGUGGUCGGGGUCggUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 164428 | 0.67 | 0.721008 |
Target: 5'- uGUGUAgcacAGCACCAcCCUgAGCCGCGa -3' miRNA: 3'- -CACGUac--UCGUGGUcGGGgUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 103066 | 0.67 | 0.721008 |
Target: 5'- -aGC---GGCGUCAGCCCCcGCCGCAg -3' miRNA: 3'- caCGuacUCGUGGUCGGGGuCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 111959 | 0.67 | 0.721008 |
Target: 5'- -aGCAgaauaGGGCcCCuuuuGCCCCGuGCCGCAg -3' miRNA: 3'- caCGUa----CUCGuGGu---CGGGGU-CGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 2595 | 0.67 | 0.721008 |
Target: 5'- cUGUuuAUGAGaCGCCAGCacCCCGGCCu-- -3' miRNA: 3'- cACG--UACUC-GUGGUCG--GGGUCGGugu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 33919 | 0.67 | 0.691215 |
Target: 5'- -gGC-UGGGCugGCCGGCCCgGGUCugGg -3' miRNA: 3'- caCGuACUCG--UGGUCGGGgUCGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 165954 | 0.67 | 0.681175 |
Target: 5'- gGUGCcaAUGGGCGCgGGUCCCccuAGCCcCGg -3' miRNA: 3'- -CACG--UACUCGUGgUCGGGG---UCGGuGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 90614 | 0.67 | 0.681175 |
Target: 5'- -gGCucugGcAGCACCGGCCaCAGCaCACAa -3' miRNA: 3'- caCGua--C-UCGUGGUCGGgGUCG-GUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 141706 | 0.67 | 0.671096 |
Target: 5'- -gGCGggGGGUGCCGGCUgCAGCCGg- -3' miRNA: 3'- caCGUa-CUCGUGGUCGGgGUCGGUgu -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 34224 | 0.67 | 0.671096 |
Target: 5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3' miRNA: 3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 31155 | 0.67 | 0.671096 |
Target: 5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3' miRNA: 3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 88516 | 0.68 | 0.650852 |
Target: 5'- uGUGCAUGGGCAcacCCAGgguccaugggaUCCCAGggcaCCACAu -3' miRNA: 3'- -CACGUACUCGU---GGUC-----------GGGGUC----GGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 82019 | 0.68 | 0.647808 |
Target: 5'- -aGUAUGGGCccgguaccuccgguACCGGCaacaCAGCCACAg -3' miRNA: 3'- caCGUACUCG--------------UGGUCGgg--GUCGGUGU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 164143 | 0.68 | 0.629533 |
Target: 5'- cUGCAUGAuGC-CCAagguaucGCCCCGGCCuccCAg -3' miRNA: 3'- cACGUACU-CGuGGU-------CGGGGUCGGu--GU- -5' |
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33291 | 3' | -59.2 | NC_007605.1 | + | 110478 | 0.68 | 0.620395 |
Target: 5'- -gGCGauaGAGCuGCCGGCCCUuagaagacuuuAGCCGCAc -3' miRNA: 3'- caCGUa--CUCG-UGGUCGGGG-----------UCGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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