miRNA display CGI


Results 81 - 97 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 2595 0.67 0.721008
Target:  5'- cUGUuuAUGAGaCGCCAGCacCCCGGCCu-- -3'
miRNA:   3'- cACG--UACUC-GUGGUCG--GGGUCGGugu -5'
33291 3' -59.2 NC_007605.1 + 111959 0.67 0.721008
Target:  5'- -aGCAgaauaGGGCcCCuuuuGCCCCGuGCCGCAg -3'
miRNA:   3'- caCGUa----CUCGuGGu---CGGGGU-CGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 103066 0.67 0.721008
Target:  5'- -aGC---GGCGUCAGCCCCcGCCGCAg -3'
miRNA:   3'- caCGuacUCGUGGUCGGGGuCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 164428 0.67 0.721008
Target:  5'- uGUGUAgcacAGCACCAcCCUgAGCCGCGa -3'
miRNA:   3'- -CACGUac--UCGUGGUcGGGgUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 31155 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 28086 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 18880 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 160534 0.68 0.620395
Target:  5'- -aGCAgGuGCACCAGCUCCAGggACAg -3'
miRNA:   3'- caCGUaCuCGUGGUCGGGGUCggUGU- -5'
33291 3' -59.2 NC_007605.1 + 110478 0.68 0.620395
Target:  5'- -gGCGauaGAGCuGCCGGCCCUuagaagacuuuAGCCGCAc -3'
miRNA:   3'- caCGUa--CUCG-UGGUCGGGG-----------UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 164143 0.68 0.629533
Target:  5'- cUGCAUGAuGC-CCAagguaucGCCCCGGCCuccCAg -3'
miRNA:   3'- cACGUACU-CGuGGU-------CGGGGUCGGu--GU- -5'
33291 3' -59.2 NC_007605.1 + 82019 0.68 0.647808
Target:  5'- -aGUAUGGGCccgguaccuccgguACCGGCaacaCAGCCACAg -3'
miRNA:   3'- caCGUACUCG--------------UGGUCGgg--GUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 88516 0.68 0.650852
Target:  5'- uGUGCAUGGGCAcacCCAGgguccaugggaUCCCAGggcaCCACAu -3'
miRNA:   3'- -CACGUACUCGU---GGUC-----------GGGGUC----GGUGU- -5'
33291 3' -59.2 NC_007605.1 + 1930 0.68 0.659972
Target:  5'- cUGCGUG-GCACCaacaacgaucccaGGCCUCAGCguCAg -3'
miRNA:   3'- cACGUACuCGUGG-------------UCGGGGUCGguGU- -5'
33291 3' -59.2 NC_007605.1 + 71821 0.68 0.660985
Target:  5'- aUGCccccGGCuccaCGGCCCCGGCCACu -3'
miRNA:   3'- cACGuac-UCGug--GUCGGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 12742 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 15811 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 65216 0.66 0.729825
Target:  5'- uGUGCGccgagGuGCugCAGCCCUcgaggaagucuguGGCCACc -3'
miRNA:   3'- -CACGUa----CuCGugGUCGGGG-------------UCGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.