miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 5' -58.5 NC_007605.1 + 110540 0.66 0.833223
Target:  5'- ----cGGCGUG-UGGCcCCGuggGGGCGCa -3'
miRNA:   3'- agauaCCGCGCaACCGcGGC---UCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 147789 0.66 0.816538
Target:  5'- cCUGUGGUGU-UUGGUGUgguuuUGGGGUACg -3'
miRNA:   3'- aGAUACCGCGcAACCGCG-----GCUCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 5056 0.66 0.807949
Target:  5'- --cAUGGC-CccUGGUGcCCGGGGCGCa -3'
miRNA:   3'- agaUACCGcGcaACCGC-GGCUCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 50525 0.66 0.799205
Target:  5'- ---cUGGgGUGU--GCGCCGGGGCGg -3'
miRNA:   3'- agauACCgCGCAacCGCGGCUCCGUg -5'
33291 5' -58.5 NC_007605.1 + 159987 0.67 0.781288
Target:  5'- cCUGgcccUGGUGCGggGG-GCCugcgagGAGGCGCu -3'
miRNA:   3'- aGAU----ACCGCGCaaCCgCGG------CUCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 57730 0.67 0.762854
Target:  5'- ---cUGGCGCGggguggGGUGUCGGGGagGCg -3'
miRNA:   3'- agauACCGCGCaa----CCGCGGCUCCg-UG- -5'
33291 5' -58.5 NC_007605.1 + 102041 0.67 0.762854
Target:  5'- --aAUGGC-CGaggagccgagGGCGCCaGAGGCGCu -3'
miRNA:   3'- agaUACCGcGCaa--------CCGCGG-CUCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 58554 0.67 0.743972
Target:  5'- cUCUgacAUGG-GCGggGGUGcCCGGGGcCGCa -3'
miRNA:   3'- -AGA---UACCgCGCaaCCGC-GGCUCC-GUG- -5'
33291 5' -58.5 NC_007605.1 + 170174 0.68 0.734384
Target:  5'- aUCgggGGgGuCGgggGGCGCCGcgcGGGCGCa -3'
miRNA:   3'- -AGauaCCgC-GCaa-CCGCGGC---UCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 170696 0.68 0.734384
Target:  5'- aUCgggGGgGuCGgggGGCGCCGcgcGGGCGCa -3'
miRNA:   3'- -AGauaCCgC-GCaa-CCGCGGC---UCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 171234 0.68 0.734384
Target:  5'- aUCgggGGgGuCGgggGGCGCCGcgcGGGCGCa -3'
miRNA:   3'- -AGauaCCgC-GCaa-CCGCGGC---UCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 160197 0.68 0.724711
Target:  5'- ----gGGCGCGgucccgGGC-CCGGGGCGg -3'
miRNA:   3'- agauaCCGCGCaa----CCGcGGCUCCGUg -5'
33291 5' -58.5 NC_007605.1 + 169637 0.68 0.695263
Target:  5'- aUCgggGGgGuCGgggGGCGCCGccGGGCGCa -3'
miRNA:   3'- -AGauaCCgC-GCaa-CCGCGGC--UCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 81762 0.69 0.675362
Target:  5'- ---cUGGCuCGuUUGcGUGCUGAGGCACa -3'
miRNA:   3'- agauACCGcGC-AAC-CGCGGCUCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 91723 0.69 0.675362
Target:  5'- ----cGGCGCGacuUUGGgGCCcGcAGGCGCg -3'
miRNA:   3'- agauaCCGCGC---AACCgCGG-C-UCCGUG- -5'
33291 5' -58.5 NC_007605.1 + 85465 0.69 0.665356
Target:  5'- --gGUGGCGUGggagugGGCGCCccccGAGGCc- -3'
miRNA:   3'- agaUACCGCGCaa----CCGCGG----CUCCGug -5'
33291 5' -58.5 NC_007605.1 + 85405 0.69 0.665356
Target:  5'- --gGUGGCGUGggagugGGCGCCccccGAGGCc- -3'
miRNA:   3'- agaUACCGCGCaa----CCGCGG----CUCCGug -5'
33291 5' -58.5 NC_007605.1 + 2905 0.69 0.625152
Target:  5'- gUCUGaaaGGCcUGUUGGCGCCGGGcCGCc -3'
miRNA:   3'- -AGAUa--CCGcGCAACCGCGGCUCcGUG- -5'
33291 5' -58.5 NC_007605.1 + 55755 0.7 0.595025
Target:  5'- ----gGGCGCc-UGGgGCCGAGGcCACa -3'
miRNA:   3'- agauaCCGCGcaACCgCGGCUCC-GUG- -5'
33291 5' -58.5 NC_007605.1 + 50428 0.7 0.565133
Target:  5'- ---cUGGCGCGc-GGC-CCGAGGUGCg -3'
miRNA:   3'- agauACCGCGCaaCCGcGGCUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.