Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 14030 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 17099 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 20167 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 23236 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 50684 | 0.7 | 0.545421 |
Target: 5'- gGAGGcgGGUGGC-GGAGGGCcGaAUCUCc -3' miRNA: 3'- -CUCCa-CCACUGuCCUCCCGaC-UGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 29374 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 32443 | 0.7 | 0.555251 |
Target: 5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3' miRNA: 3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 17159 | 0.71 | 0.497222 |
Target: 5'- cAGGccUGGUGACAGGGcgcgcauGGCUGAgCCUCu -3' miRNA: 3'- cUCC--ACCACUGUCCUc------CCGACU-GGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 64713 | 0.71 | 0.497222 |
Target: 5'- uAGG-GGUGAC-GG-GGGCUGGCCa- -3' miRNA: 3'- cUCCaCCACUGuCCuCCCGACUGGag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 16892 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 13823 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 32236 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 29167 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 26099 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 35305 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 23030 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 19961 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 59578 | 0.78 | 0.2007 |
Target: 5'- -cGGUGGUGACAGGucccGGCUGGCC-Cg -3' miRNA: 3'- cuCCACCACUGUCCuc--CCGACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 50136 | 0.97 | 0.010412 |
Target: 5'- gGAGGUGGUGACAGGAGGGUcGACCUCc -3' miRNA: 3'- -CUCCACCACUGUCCUCCCGaCUGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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