Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 59578 | 0.78 | 0.2007 |
Target: 5'- -cGGUGGUGACAGGucccGGCUGGCC-Cg -3' miRNA: 3'- cuCCACCACUGUCCuc--CCGACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 63099 | 0.66 | 0.799205 |
Target: 5'- cGGG-GGUGGCAguGGAGGGggGAgCUUCa -3' miRNA: 3'- cUCCaCCACUGU--CCUCCCgaCU-GGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 63610 | 0.67 | 0.713982 |
Target: 5'- gGGGGUGGcgGugGaguaugcuucgucGGGGGGCUgGGCCUg -3' miRNA: 3'- -CUCCACCa-CugU-------------CCUCCCGA-CUGGAg -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 64713 | 0.71 | 0.497222 |
Target: 5'- uAGG-GGUGAC-GG-GGGCUGGCCa- -3' miRNA: 3'- cUCCaCCACUGuCCuCCCGACUGGag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 65432 | 0.68 | 0.695263 |
Target: 5'- cAGGUGGccACAGacuuccucGAGGGCUGcagcACCUCg -3' miRNA: 3'- cUCCACCacUGUC--------CUCCCGAC----UGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 82014 | 0.68 | 0.655324 |
Target: 5'- uGAGGggauacugGGUcaACuGGGGGGGCUGcACCUCa -3' miRNA: 3'- -CUCCa-------CCAc-UG-UCCUCCCGAC-UGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 85350 | 0.68 | 0.665356 |
Target: 5'- cAGGUGGUGACauGGGAguGGGCgc-UCUCg -3' miRNA: 3'- cUCCACCACUG--UCCU--CCCGacuGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 85411 | 0.67 | 0.71496 |
Target: 5'- uGAGGaGGUGGCguGGGAguGGGCgccccccgaGGCCUCu -3' miRNA: 3'- -CUCCaCCACUG--UCCU--CCCGa--------CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 85471 | 0.67 | 0.71496 |
Target: 5'- uGAGGaGGUGGCguGGGAguGGGCgccccccgaGGCCUCu -3' miRNA: 3'- -CUCCaCCACUG--UCCU--CCCGa--------CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 91392 | 0.66 | 0.811403 |
Target: 5'- gGGGGUGGgagccaaagaggcaGGCAGGGGccGGUUGGCC-Ca -3' miRNA: 3'- -CUCCACCa-------------CUGUCCUC--CCGACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 99397 | 0.69 | 0.625152 |
Target: 5'- uGGGGcUGGUGGCcuGGGAGGuGCUGAggcCCg- -3' miRNA: 3'- -CUCC-ACCACUG--UCCUCC-CGACU---GGag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 125574 | 0.66 | 0.816538 |
Target: 5'- gGAGGUGGgcagcgugGuCAGGGuGGGCagagGACCa- -3' miRNA: 3'- -CUCCACCa-------CuGUCCU-CCCGa---CUGGag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 133134 | 0.69 | 0.645274 |
Target: 5'- -cGGUGGUGGaggugGGGAGGGUcuuuUGGCC-Ca -3' miRNA: 3'- cuCCACCACUg----UCCUCCCG----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 137576 | 0.67 | 0.71496 |
Target: 5'- uGGGGUGGcUGGCGGGcuGGGGgaGGCg-- -3' miRNA: 3'- -CUCCACC-ACUGUCC--UCCCgaCUGgag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 150854 | 0.67 | 0.753465 |
Target: 5'- cAGGUGGacagGGCcgAGGAGGGCUGGg--- -3' miRNA: 3'- cUCCACCa---CUG--UCCUCCCGACUggag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 153551 | 0.69 | 0.625152 |
Target: 5'- -cGGUGG-GAgAGGA-GGCUGGCCg- -3' miRNA: 3'- cuCCACCaCUgUCCUcCCGACUGGag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 158605 | 0.69 | 0.635214 |
Target: 5'- --cGUGGUGGCGGGGGGuGCgGGCUg- -3' miRNA: 3'- cucCACCACUGUCCUCC-CGaCUGGag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 158805 | 0.69 | 0.635214 |
Target: 5'- uGAGGUaaagcccauccGGgGGCAGGgccuggccGGGGCUGACCg- -3' miRNA: 3'- -CUCCA-----------CCaCUGUCC--------UCCCGACUGGag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 166754 | 0.66 | 0.781288 |
Target: 5'- uGGGUccucGG-GGCAGGGGuGGCUaGGCCUg -3' miRNA: 3'- cUCCA----CCaCUGUCCUC-CCGA-CUGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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