Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 3' | -58.9 | NC_007605.1 | + | 16892 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 19961 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 85471 | 0.67 | 0.71496 |
Target: 5'- uGAGGaGGUGGCguGGGAguGGGCgccccccgaGGCCUCu -3' miRNA: 3'- -CUCCaCCACUG--UCCU--CCCGa--------CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 137576 | 0.67 | 0.71496 |
Target: 5'- uGGGGUGGcUGGCGGGcuGGGGgaGGCg-- -3' miRNA: 3'- -CUCCACC-ACUGUCC--UCCCgaCUGgag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 125574 | 0.66 | 0.816538 |
Target: 5'- gGAGGUGGgcagcgugGuCAGGGuGGGCagagGACCa- -3' miRNA: 3'- -CUCCACCa-------CuGUCCU-CCCGa---CUGGag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 36975 | 0.66 | 0.790316 |
Target: 5'- cAGGUGGcagaggGGUAGGAGGGgUaGGCCUUg -3' miRNA: 3'- cUCCACCa-----CUGUCCUCCCgA-CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 85411 | 0.67 | 0.71496 |
Target: 5'- uGAGGaGGUGGCguGGGAguGGGCgccccccgaGGCCUCu -3' miRNA: 3'- -CUCCaCCACUG--UCCU--CCCGa--------CUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 65432 | 0.68 | 0.695263 |
Target: 5'- cAGGUGGccACAGacuuccucGAGGGCUGcagcACCUCg -3' miRNA: 3'- cUCCACCacUGUC--------CUCCCGAC----UGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 150854 | 0.67 | 0.753465 |
Target: 5'- cAGGUGGacagGGCcgAGGAGGGCUGGg--- -3' miRNA: 3'- cUCCACCa---CUG--UCCUCCCGACUggag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 85350 | 0.68 | 0.665356 |
Target: 5'- cAGGUGGUGACauGGGAguGGGCgc-UCUCg -3' miRNA: 3'- cUCCACCACUG--UCCU--CCCGacuGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 51448 | 0.67 | 0.734384 |
Target: 5'- aAGGUGGccccUGGCAGGcccAGGGaCUGGCUg- -3' miRNA: 3'- cUCCACC----ACUGUCC---UCCC-GACUGGag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 36562 | 0.67 | 0.743972 |
Target: 5'- gGGGGUGGUGGUGGGGGGGgUGGu--- -3' miRNA: 3'- -CUCCACCACUGUCCUCCCgACUggag -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 23030 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 26099 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 29167 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 32236 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 35305 | 0.72 | 0.451031 |
Target: 5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3' miRNA: 3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 50136 | 0.97 | 0.010412 |
Target: 5'- gGAGGUGGUGACAGGAGGGUcGACCUCc -3' miRNA: 3'- -CUCCACCACUGUCCUCCCGaCUGGAG- -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 29435 | 0.66 | 0.807949 |
Target: 5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3' miRNA: 3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5' |
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33292 | 3' | -58.9 | NC_007605.1 | + | 32504 | 0.66 | 0.807949 |
Target: 5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3' miRNA: 3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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