miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 3' -58.9 NC_007605.1 + 65432 0.68 0.695263
Target:  5'- cAGGUGGccACAGacuuccucGAGGGCUGcagcACCUCg -3'
miRNA:   3'- cUCCACCacUGUC--------CUCCCGAC----UGGAG- -5'
33292 3' -58.9 NC_007605.1 + 18398 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 21467 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 33743 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 24536 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 15329 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 27605 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 30674 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 12260 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 85350 0.68 0.665356
Target:  5'- cAGGUGGUGACauGGGAguGGGCgc-UCUCg -3'
miRNA:   3'- cUCCACCACUG--UCCU--CCCGacuGGAG- -5'
33292 3' -58.9 NC_007605.1 + 82014 0.68 0.655324
Target:  5'- uGAGGggauacugGGUcaACuGGGGGGGCUGcACCUCa -3'
miRNA:   3'- -CUCCa-------CCAc-UG-UCCUCCCGAC-UGGAG- -5'
33292 3' -58.9 NC_007605.1 + 35115 0.69 0.645274
Target:  5'- uGGGcGGcuGCAGGGGGGCUGACa-- -3'
miRNA:   3'- cUCCaCCacUGUCCUCCCGACUGgag -5'
33292 3' -58.9 NC_007605.1 + 133134 0.69 0.645274
Target:  5'- -cGGUGGUGGaggugGGGAGGGUcuuuUGGCC-Ca -3'
miRNA:   3'- cuCCACCACUg----UCCUCCCG----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 51283 0.69 0.635214
Target:  5'- aGAGG-GGgcucugugGGCuGGGAGGGCcagaGGCCUCa -3'
miRNA:   3'- -CUCCaCCa-------CUG-UCCUCCCGa---CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 158805 0.69 0.635214
Target:  5'- uGAGGUaaagcccauccGGgGGCAGGgccuggccGGGGCUGACCg- -3'
miRNA:   3'- -CUCCA-----------CCaCUGUCC--------UCCCGACUGGag -5'
33292 3' -58.9 NC_007605.1 + 158605 0.69 0.635214
Target:  5'- --cGUGGUGGCGGGGGGuGCgGGCUg- -3'
miRNA:   3'- cucCACCACUGUCCUCC-CGaCUGGag -5'
33292 3' -58.9 NC_007605.1 + 153551 0.69 0.625152
Target:  5'- -cGGUGG-GAgAGGA-GGCUGGCCg- -3'
miRNA:   3'- cuCCACCaCUgUCCUcCCGACUGGag -5'
33292 3' -58.9 NC_007605.1 + 99397 0.69 0.625152
Target:  5'- uGGGGcUGGUGGCcuGGGAGGuGCUGAggcCCg- -3'
miRNA:   3'- -CUCC-ACCACUG--UCCUCC-CGACU---GGag -5'
33292 3' -58.9 NC_007605.1 + 57868 0.69 0.615095
Target:  5'- -uGGUGGagGACAGaGGGGGCggcGGCCg- -3'
miRNA:   3'- cuCCACCa-CUGUC-CUCCCGa--CUGGag -5'
33292 3' -58.9 NC_007605.1 + 14030 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.