miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 5' -61.5 NC_007605.1 + 27435 0.66 0.713945
Target:  5'- ------cCCCCUCCccGUCCCCCUUCg -3'
miRNA:   3'- aucaccaGGGGAGGccUAGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 21297 0.66 0.713945
Target:  5'- ------cCCCCUCCccGUCCCCCUUCg -3'
miRNA:   3'- aucaccaGGGGAGGccUAGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 18228 0.66 0.713945
Target:  5'- ------cCCCCUCCccGUCCCCCUUCg -3'
miRNA:   3'- aucaccaGGGGAGGccUAGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 33512 0.66 0.694817
Target:  5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3'
miRNA:   3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5'
33292 5' -61.5 NC_007605.1 + 140647 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 140748 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 142481 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 34676 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 31607 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 142277 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 143092 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 159965 0.67 0.65605
Target:  5'- aGGU-GUCCagcgCUCUGGucgCCCCCUCUg -3'
miRNA:   3'- aUCAcCAGGg---GAGGCCua-GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 157392 0.67 0.665787
Target:  5'- gUGGUGGcgUUCC-CCGcAUCCCgCCUCCg -3'
miRNA:   3'- -AUCACCa-GGGGaGGCcUAGGG-GGAGG- -5'
33292 5' -61.5 NC_007605.1 + 93423 0.67 0.665787
Target:  5'- ---aGGUCCuCCUCUGGAcuguggCCCUCUgCa -3'
miRNA:   3'- aucaCCAGG-GGAGGCCUa-----GGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 142786 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 16262 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 19331 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 22400 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 25469 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 28538 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.