miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 5' -61.5 NC_007605.1 + 141666 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 25469 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 22400 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 19331 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 16262 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 13193 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 96739 0.67 0.617001
Target:  5'- ---gGGUCUCCaCCGcGcaggCCCCCUCCa -3'
miRNA:   3'- aucaCCAGGGGaGGC-Cua--GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 27948 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 31017 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 28538 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 31607 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 34676 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 141564 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 141462 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 141360 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 141258 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 141156 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 141054 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 140748 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 140647 0.67 0.6502
Target:  5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.