Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 5' | -61.5 | NC_007605.1 | + | 18050 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 21119 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 24188 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 27257 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 33395 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 16875 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 13806 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 23012 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 19944 | 0.71 | 0.422782 |
Target: 5'- cAGgGGUCCCCga-GGGUaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA--------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 26081 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 32219 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 116112 | 0.71 | 0.422782 |
Target: 5'- gAGUGG---CCUCgGGAcCCCCCUCCu -3' miRNA: 3'- aUCACCaggGGAGgCCUaGGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 29150 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 163024 | 0.77 | 0.190462 |
Target: 5'- ---aGGUCCCCUCCugcaGGGUCCCCaggCCg -3' miRNA: 3'- aucaCCAGGGGAGG----CCUAGGGGga-GG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 50102 | 1.09 | 0.00113 |
Target: 5'- cUAGUGGUCCCCUCCGGAUCCCCCUCCu -3' miRNA: 3'- -AUCACCAGGGGAGGCCUAGGGGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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