Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 5' | -61.5 | NC_007605.1 | + | 31607 | 0.67 | 0.626765 |
Target: 5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3' miRNA: 3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 61455 | 0.67 | 0.646297 |
Target: 5'- -uGUGGcaggCCCCggccCCGGcUCCggCCCUCCc -3' miRNA: 3'- auCACCa---GGGGa---GGCCuAGG--GGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 83225 | 0.67 | 0.646297 |
Target: 5'- cUGGUgGGUCCUCggagCCaGAUgCCCCC-CCg -3' miRNA: 3'- -AUCA-CCAGGGGa---GGcCUA-GGGGGaGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 58189 | 0.67 | 0.646297 |
Target: 5'- ---aGGUcacaCCCC-CgGGGUCCCCgCUCCc -3' miRNA: 3'- aucaCCA----GGGGaGgCCUAGGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142990 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 143092 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 140748 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 141666 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 140647 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142888 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142786 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 141767 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 141869 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 141971 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142073 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142175 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142277 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142481 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142583 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142379 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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