miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 5' -61.5 NC_007605.1 + 32219 0.71 0.431255
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 33395 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 33512 0.66 0.694817
Target:  5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3'
miRNA:   3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5'
33292 5' -61.5 NC_007605.1 + 33573 0.66 0.713945
Target:  5'- ------cCCCCUCCccGUCCCCCUUCg -3'
miRNA:   3'- aucaccaGGGGAGGccUAGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 34086 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 34676 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 35288 0.68 0.607248
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCUc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 39815 0.7 0.457252
Target:  5'- -cGUGGUCCCCUggaccccagccCCGccGAUCCCuCCcCCa -3'
miRNA:   3'- auCACCAGGGGA-----------GGC--CUAGGG-GGaGG- -5'
33292 5' -61.5 NC_007605.1 + 39977 0.66 0.732819
Target:  5'- cUGG-GGUCCCg---GGAcgCCCCCUCCc -3'
miRNA:   3'- -AUCaCCAGGGgaggCCUa-GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 50102 1.09 0.00113
Target:  5'- cUAGUGGUCCCCUCCGGAUCCCCCUCCu -3'
miRNA:   3'- -AUCACCAGGGGAGGCCUAGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 51330 0.68 0.557901
Target:  5'- gUAGUGcUCCCCUuuuccccCUGGuccGUCuCCCCUCCu -3'
miRNA:   3'- -AUCACcAGGGGA-------GGCC---UAG-GGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 58189 0.67 0.646297
Target:  5'- ---aGGUcacaCCCC-CgGGGUCCCCgCUCCc -3'
miRNA:   3'- aucaCCA----GGGGaGgCCUAGGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 61172 0.66 0.704409
Target:  5'- cUGGcUGGUCUCCUUCGGcagcgaCCuggCCCUCCc -3'
miRNA:   3'- -AUC-ACCAGGGGAGGCCua----GG---GGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 61455 0.67 0.646297
Target:  5'- -uGUGGcaggCCCCggccCCGGcUCCggCCCUCCc -3'
miRNA:   3'- auCACCa---GGGGa---GGCCuAGG--GGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 65458 0.68 0.558859
Target:  5'- gUGGUGGcCUgCUCCauucuucagGGAUCCCCCacuuaugauUCCa -3'
miRNA:   3'- -AUCACCaGGgGAGG---------CCUAGGGGG---------AGG- -5'
33292 5' -61.5 NC_007605.1 + 83225 0.67 0.646297
Target:  5'- cUGGUgGGUCCUCggagCCaGAUgCCCCC-CCg -3'
miRNA:   3'- -AUCA-CCAGGGGa---GGcCUA-GGGGGaGG- -5'
33292 5' -61.5 NC_007605.1 + 93423 0.67 0.665787
Target:  5'- ---aGGUCCuCCUCUGGAcuguggCCCUCUgCa -3'
miRNA:   3'- aucaCCAGG-GGAGGCCUa-----GGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 96739 0.67 0.617001
Target:  5'- ---gGGUCUCCaCCGcGcaggCCCCCUCCa -3'
miRNA:   3'- aucaCCAGGGGaGGC-Cua--GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 106827 0.66 0.675499
Target:  5'- cGGUGGUCCCCaucaCCGccauguUCCCCaaCCu -3'
miRNA:   3'- aUCACCAGGGGa---GGCcu----AGGGGgaGG- -5'
33292 5' -61.5 NC_007605.1 + 116112 0.71 0.422782
Target:  5'- gAGUGG---CCUCgGGAcCCCCCUCCu -3'
miRNA:   3'- aUCACCaggGGAGgCCUaGGGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.