Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 5' | -61.5 | NC_007605.1 | + | 142277 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142379 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142481 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142583 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142685 | 0.69 | 0.546439 |
Target: 5'- gGGUGG-CCCa-CCGGGuccgcuggguccgcUCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCU--------------AGGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142786 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142888 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142990 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 143092 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 157392 | 0.67 | 0.665787 |
Target: 5'- gUGGUGGcgUUCC-CCGcAUCCCgCCUCCg -3' miRNA: 3'- -AUCACCa-GGGGaGGCcUAGGG-GGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 159670 | 0.68 | 0.607248 |
Target: 5'- ---cGG-CCCgUCCGGcgCCCUCUCg -3' miRNA: 3'- aucaCCaGGGgAGGCCuaGGGGGAGg -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 159965 | 0.67 | 0.65605 |
Target: 5'- aGGU-GUCCagcgCUCUGGucgCCCCCUCUg -3' miRNA: 3'- aUCAcCAGGg---GAGGCCua-GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 162148 | 0.66 | 0.675499 |
Target: 5'- gGGUGGUCUUCaCgGGGgagaaugCCgCCCUCCa -3' miRNA: 3'- aUCACCAGGGGaGgCCUa------GG-GGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 163024 | 0.77 | 0.190462 |
Target: 5'- ---aGGUCCCCUCCugcaGGGUCCCCaggCCg -3' miRNA: 3'- aucaCCAGGGGAGG----CCUAGGGGga-GG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 168979 | 0.68 | 0.558859 |
Target: 5'- ---cGGcCCCCUCgaGGAccCCCCCUCUc -3' miRNA: 3'- aucaCCaGGGGAGg-CCUa-GGGGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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