Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 5' | -61.5 | NC_007605.1 | + | 31607 | 0.67 | 0.626765 |
Target: 5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3' miRNA: 3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 141767 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 140748 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 141666 | 0.67 | 0.6502 |
Target: 5'- gGGUGG-CCCa-CCGGGUccgcuggguccgcugCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCUA---------------GGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 28538 | 0.67 | 0.626765 |
Target: 5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3' miRNA: 3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 25469 | 0.67 | 0.626765 |
Target: 5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3' miRNA: 3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 22400 | 0.67 | 0.626765 |
Target: 5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3' miRNA: 3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 26081 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 29150 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 14981 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 18050 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 21119 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 24188 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 27257 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 30326 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 35288 | 0.68 | 0.607248 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCUc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 96739 | 0.67 | 0.617001 |
Target: 5'- ---gGGUCUCCaCCGcGcaggCCCCCUCCa -3' miRNA: 3'- aucaCCAGGGGaGGC-Cua--GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 13193 | 0.67 | 0.626765 |
Target: 5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3' miRNA: 3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 16262 | 0.67 | 0.626765 |
Target: 5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3' miRNA: 3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 19331 | 0.67 | 0.626765 |
Target: 5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3' miRNA: 3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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