miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33293 3' -58.6 NC_007605.1 + 140537 0.66 0.814077
Target:  5'- cAGGAGA---GGCGGGGGGuaugugcugcGuuGGGAAc -3'
miRNA:   3'- -UCUUCUuugUCGUCCCCC----------CggCCCUU- -5'
33293 3' -58.6 NC_007605.1 + 155969 0.66 0.814077
Target:  5'- uGGuAGAAGCAcaGGGGGGGCUGaGGc- -3'
miRNA:   3'- -UCuUCUUUGUcgUCCCCCCGGC-CCuu -5'
33293 3' -58.6 NC_007605.1 + 91745 0.66 0.814077
Target:  5'- aGGAAGAAggGCcuCAGGGauaGCCGGGAAg -3'
miRNA:   3'- -UCUUCUU--UGucGUCCCcc-CGGCCCUU- -5'
33293 3' -58.6 NC_007605.1 + 54690 0.66 0.808867
Target:  5'- aAGAAGGAGgAGgAGGGcGaggagcggaggaagcGGCCGGGGc -3'
miRNA:   3'- -UCUUCUUUgUCgUCCC-C---------------CCGGCCCUu -5'
33293 3' -58.6 NC_007605.1 + 91581 0.66 0.796492
Target:  5'- gGGAGGAAGaaaGGUGGGcuuugaGGGGUgGGGGAa -3'
miRNA:   3'- -UCUUCUUUg--UCGUCC------CCCCGgCCCUU- -5'
33293 3' -58.6 NC_007605.1 + 95932 0.66 0.787477
Target:  5'- gGGGcAGGAGCAGgAGGaGGGGCa-GGAg -3'
miRNA:   3'- -UCU-UCUUUGUCgUCC-CCCCGgcCCUu -5'
33293 3' -58.6 NC_007605.1 + 108046 0.66 0.787477
Target:  5'- cGAAGGGugGgGguGGgugcaagaauuGGGGCUGGGAAu -3'
miRNA:   3'- uCUUCUUugU-CguCC-----------CCCCGGCCCUU- -5'
33293 3' -58.6 NC_007605.1 + 95295 0.66 0.787477
Target:  5'- uGggGAGACGGCGGGGGagguuuccucaGGCUuGGc- -3'
miRNA:   3'- uCuuCUUUGUCGUCCCC-----------CCGGcCCuu -5'
33293 3' -58.6 NC_007605.1 + 57710 0.66 0.782
Target:  5'- uGAAGGAGCGauaguugagacuggcGCGGGGuGGGgugUCGGGGAg -3'
miRNA:   3'- uCUUCUUUGU---------------CGUCCC-CCC---GGCCCUU- -5'
33293 3' -58.6 NC_007605.1 + 168480 0.66 0.778323
Target:  5'- gAGAGcGAugAGCAGGaGGGuGaCUGGGGAa -3'
miRNA:   3'- -UCUUcUUugUCGUCC-CCC-C-GGCCCUU- -5'
33293 3' -58.6 NC_007605.1 + 57878 0.66 0.778323
Target:  5'- cAGAGGggGCGGCGGccggaGGuGGGCUucuuguGGGGg -3'
miRNA:   3'- -UCUUCuuUGUCGUC-----CC-CCCGG------CCCUu -5'
33293 3' -58.6 NC_007605.1 + 157427 0.67 0.759638
Target:  5'- --cAGAAcgGCGGCGGGGgugcucccgcGGGCCGcGGAu -3'
miRNA:   3'- ucuUCUU--UGUCGUCCC----------CCCGGC-CCUu -5'
33293 3' -58.6 NC_007605.1 + 62330 0.67 0.750125
Target:  5'- uGGuGGAGcACAGUggGGGcGGGGCCGGcGGGg -3'
miRNA:   3'- -UCuUCUU-UGUCG--UCC-CCCCGGCC-CUU- -5'
33293 3' -58.6 NC_007605.1 + 10611 0.67 0.749168
Target:  5'- aAGggGAcaaguguGGCAGguGGGcGGGaaGGGGc -3'
miRNA:   3'- -UCuuCU-------UUGUCguCCC-CCCggCCCUu -5'
33293 3' -58.6 NC_007605.1 + 26314 0.67 0.734695
Target:  5'- uGggGGGACcggGGCAGuggacaggggcgggaGGGGGCUGGGc- -3'
miRNA:   3'- uCuuCUUUG---UCGUC---------------CCCCCGGCCCuu -5'
33293 3' -58.6 NC_007605.1 + 23245 0.67 0.734695
Target:  5'- uGggGGGACcggGGCAGuggacaggggcgggaGGGGGCUGGGc- -3'
miRNA:   3'- uCuuCUUUG---UCGUC---------------CCCCCGGCCCuu -5'
33293 3' -58.6 NC_007605.1 + 29383 0.67 0.734695
Target:  5'- uGggGGGACcggGGCAGuggacaggggcgggaGGGGGCUGGGc- -3'
miRNA:   3'- uCuuCUUUG---UCGUC---------------CCCCCGGCCCuu -5'
33293 3' -58.6 NC_007605.1 + 20176 0.67 0.734695
Target:  5'- uGggGGGACcggGGCAGuggacaggggcgggaGGGGGCUGGGc- -3'
miRNA:   3'- uCuuCUUUG---UCGUC---------------CCCCCGGCCCuu -5'
33293 3' -58.6 NC_007605.1 + 14039 0.67 0.734695
Target:  5'- uGggGGGACcggGGCAGuggacaggggcgggaGGGGGCUGGGc- -3'
miRNA:   3'- uCuuCUUUG---UCGUC---------------CCCCCGGCCCuu -5'
33293 3' -58.6 NC_007605.1 + 17108 0.67 0.734695
Target:  5'- uGggGGGACcggGGCAGuggacaggggcgggaGGGGGCUGGGc- -3'
miRNA:   3'- uCuuCUUUG---UCGUC---------------CCCCCGGCCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.