miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33293 5' -61.9 NC_007605.1 + 141871 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 142890 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 142992 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 140649 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 143094 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 142585 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 142075 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 142279 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 141566 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 141362 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 140852 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 140954 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 141464 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 142381 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 141260 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 141158 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 141973 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 141056 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 141769 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 140750 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.