miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 95911 0.67 0.682266
Target:  5'- gCCCGGGGcuccUGGucuuCCGCCUCCucGUC-CUCg -3'
miRNA:   3'- -GGGCCCUa---ACC----GGCGGGGG--UAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 136358 0.67 0.67253
Target:  5'- gCUGGGAUauUGGCCacaCCCCUGUCcugcCUCa -3'
miRNA:   3'- gGGCCCUA--ACCGGc--GGGGGUAGu---GAG- -5'
33294 3' -60.5 NC_007605.1 + 125706 0.67 0.697763
Target:  5'- cUCCGGGAgaucaggacgagGGCCGCCaCCAaccUCACcCa -3'
miRNA:   3'- -GGGCCCUaa----------CCGGCGGgGGU---AGUGaG- -5'
33294 3' -60.5 NC_007605.1 + 160011 0.67 0.679349
Target:  5'- gCCCGGGAccgcgcccuccucugGGCCGCCCggCC-UCGCc- -3'
miRNA:   3'- -GGGCCCUaa-------------CCGGCGGG--GGuAGUGag -5'
33294 3' -60.5 NC_007605.1 + 116169 0.67 0.682266
Target:  5'- gCCGGGAUgugaGGCCucagcGCCCCC-UC-CUg -3'
miRNA:   3'- gGGCCCUAa---CCGG-----CGGGGGuAGuGAg -5'
33294 3' -60.5 NC_007605.1 + 148750 0.67 0.691965
Target:  5'- cCCUGGuGAgcccuuGCCGCUCCCcgCAUUCc -3'
miRNA:   3'- -GGGCC-CUaac---CGGCGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142694 0.67 0.701618
Target:  5'- aCCGGGuccgcugGGuCCGCUCCC--CGCUCc -3'
miRNA:   3'- gGGCCCuaa----CC-GGCGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 19951 0.68 0.643169
Target:  5'- cCCCGaGGGUaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAaCCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 50377 0.68 0.652974
Target:  5'- cCCCGaGGAcgGGCgccggccgccagCGCCCCCGUgGCc- -3'
miRNA:   3'- -GGGC-CCUaaCCG------------GCGGGGGUAgUGag -5'
33294 3' -60.5 NC_007605.1 + 171296 0.68 0.643169
Target:  5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3'
miRNA:   3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 169699 0.68 0.643169
Target:  5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3'
miRNA:   3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 50585 0.68 0.623542
Target:  5'- gCCaCGGGGgcgcUGGCgGCCggcgCCCGUC-CUCg -3'
miRNA:   3'- -GG-GCCCUa---ACCGgCGG----GGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 49042 0.68 0.623542
Target:  5'- gCCCGGauucggGGCCGCCagCCCGagcgggCGCUCg -3'
miRNA:   3'- -GGGCCcuaa--CCGGCGG--GGGUa-----GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 170759 0.68 0.643169
Target:  5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3'
miRNA:   3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 170236 0.68 0.643169
Target:  5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3'
miRNA:   3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 103950 0.69 0.594164
Target:  5'- gCCGGGAggugcugGGUCGCCugaCCCucuugCACUCc -3'
miRNA:   3'- gGGCCCUaa-----CCGGCGG---GGGua---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 137311 0.69 0.60394
Target:  5'- uCCCGGGGUccagaguucccGGCUGCUCCCG-C-CUCa -3'
miRNA:   3'- -GGGCCCUAa----------CCGGCGGGGGUaGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 35295 0.69 0.594164
Target:  5'- cCCCGaGGGUgaGGCCcaGCCCCCucUCGCcCa -3'
miRNA:   3'- -GGGC-CCUAa-CCGG--CGGGGGu-AGUGaG- -5'
33294 3' -60.5 NC_007605.1 + 159846 0.69 0.583441
Target:  5'- -gCGGGAaUGGCCGCcacccucccccugCCCCGUUGCa- -3'
miRNA:   3'- ggGCCCUaACCGGCG-------------GGGGUAGUGag -5'
33294 3' -60.5 NC_007605.1 + 14970 0.69 0.555377
Target:  5'- uCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.