Results 61 - 80 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33294 | 3' | -60.5 | NC_007605.1 | + | 35295 | 0.69 | 0.594164 |
Target: 5'- cCCCGaGGGUgaGGCCcaGCCCCCucUCGCcCa -3' miRNA: 3'- -GGGC-CCUAa-CCGG--CGGGGGu-AGUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 159846 | 0.69 | 0.583441 |
Target: 5'- -gCGGGAaUGGCCGCcacccucccccugCCCCGUUGCa- -3' miRNA: 3'- ggGCCCUaACCGGCG-------------GGGGUAGUGag -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 144057 | 0.69 | 0.555377 |
Target: 5'- cUuuGGGAUgcaucacuuUGaGCCacuaaGCCCCCGUUGCUCg -3' miRNA: 3'- -GggCCCUA---------AC-CGG-----CGGGGGUAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 55953 | 0.7 | 0.498744 |
Target: 5'- gCCGGug-UGGCCucggccccaggcGCCCCCAUCuCUCc -3' miRNA: 3'- gGGCCcuaACCGG------------CGGGGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 24177 | 0.7 | 0.536252 |
Target: 5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3' miRNA: 3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 33384 | 0.7 | 0.536252 |
Target: 5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3' miRNA: 3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 30315 | 0.7 | 0.536252 |
Target: 5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3' miRNA: 3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 27246 | 0.7 | 0.536252 |
Target: 5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3' miRNA: 3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 18039 | 0.7 | 0.536252 |
Target: 5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3' miRNA: 3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 21108 | 0.7 | 0.536252 |
Target: 5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3' miRNA: 3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 162795 | 0.71 | 0.471397 |
Target: 5'- -aUGGGAcuggcGGCCGCCCCCGcCACg- -3' miRNA: 3'- ggGCCCUaa---CCGGCGGGGGUaGUGag -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 162988 | 0.72 | 0.402495 |
Target: 5'- -gCGGGGgcGGCCGCCaguCCCAugugcUCGCUCu -3' miRNA: 3'- ggGCCCUaaCCGGCGG---GGGU-----AGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 153242 | 0.72 | 0.422499 |
Target: 5'- gCCGGGuccucGGCCaucuccgucuuucucGCCCCCuUCACUCc -3' miRNA: 3'- gGGCCCuaa--CCGG---------------CGGGGGuAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 3370 | 0.72 | 0.410757 |
Target: 5'- uCCCGuGGcccUGGCCGgCCCCAUUuCUCc -3' miRNA: 3'- -GGGC-CCua-ACCGGCgGGGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 58327 | 0.73 | 0.378352 |
Target: 5'- aCCGGGcgUccccGCCGCcuCCCCAUCACUg -3' miRNA: 3'- gGGCCCuaAc---CGGCG--GGGGUAGUGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 28132 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 25063 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 21994 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 15857 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 12788 | 0.74 | 0.333067 |
Target: 5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3' miRNA: 3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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