Results 61 - 80 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33294 | 3' | -60.5 | NC_007605.1 | + | 49042 | 0.68 | 0.623542 |
Target: 5'- gCCCGGauucggGGCCGCCagCCCGagcgggCGCUCg -3' miRNA: 3'- -GGGCCcuaa--CCGGCGG--GGGUa-----GUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 171296 | 0.68 | 0.643169 |
Target: 5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3' miRNA: 3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 170759 | 0.68 | 0.643169 |
Target: 5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3' miRNA: 3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 169699 | 0.68 | 0.643169 |
Target: 5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3' miRNA: 3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 19951 | 0.68 | 0.643169 |
Target: 5'- cCCCGaGGGUaGGCCcagcccccucccGCCCCUGUcCACUg -3' miRNA: 3'- -GGGC-CCUAaCCGG------------CGGGGGUA-GUGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 170236 | 0.68 | 0.643169 |
Target: 5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3' miRNA: 3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 50377 | 0.68 | 0.652974 |
Target: 5'- cCCCGaGGAcgGGCgccggccgccagCGCCCCCGUgGCc- -3' miRNA: 3'- -GGGC-CCUaaCCG------------GCGGGGGUAgUGag -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 136358 | 0.67 | 0.67253 |
Target: 5'- gCUGGGAUauUGGCCacaCCCCUGUCcugcCUCa -3' miRNA: 3'- gGGCCCUA--ACCGGc--GGGGGUAGu---GAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 64913 | 0.67 | 0.67253 |
Target: 5'- uCCCaucc-UGGCCaGCCCCCGUCACc- -3' miRNA: 3'- -GGGcccuaACCGG-CGGGGGUAGUGag -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 160011 | 0.67 | 0.679349 |
Target: 5'- gCCCGGGAccgcgcccuccucugGGCCGCCCggCC-UCGCc- -3' miRNA: 3'- -GGGCCCUaa-------------CCGGCGGG--GGuAGUGag -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 95911 | 0.67 | 0.682266 |
Target: 5'- gCCCGGGGcuccUGGucuuCCGCCUCCucGUC-CUCg -3' miRNA: 3'- -GGGCCCUa---ACC----GGCGGGGG--UAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 116169 | 0.67 | 0.682266 |
Target: 5'- gCCGGGAUgugaGGCCucagcGCCCCC-UC-CUg -3' miRNA: 3'- gGGCCCUAa---CCGG-----CGGGGGuAGuGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 148750 | 0.67 | 0.691965 |
Target: 5'- cCCUGGuGAgcccuuGCCGCUCCCcgCAUUCc -3' miRNA: 3'- -GGGCC-CUaac---CGGCGGGGGuaGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 61123 | 0.67 | 0.691965 |
Target: 5'- aCCCGGGccc-GCCGUCCUCucgaGCUCa -3' miRNA: 3'- -GGGCCCuaacCGGCGGGGGuag-UGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 125706 | 0.67 | 0.697763 |
Target: 5'- cUCCGGGAgaucaggacgagGGCCGCCaCCAaccUCACcCa -3' miRNA: 3'- -GGGCCCUaa----------CCGGCGGgGGU---AGUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142694 | 0.67 | 0.701618 |
Target: 5'- aCCGGGuccgcugGGuCCGCUCCC--CGCUCc -3' miRNA: 3'- gGGCCCuaa----CC-GGCGGGGGuaGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 137655 | 0.67 | 0.711217 |
Target: 5'- aCCUGGGugcacugGGCCcuGCUCCUaAUCACUUg -3' miRNA: 3'- -GGGCCCuaa----CCGG--CGGGGG-UAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 2886 | 0.67 | 0.720754 |
Target: 5'- gCCGGGcc--GCCGCCCUggCAUCuGCUCc -3' miRNA: 3'- gGGCCCuaacCGGCGGGG--GUAG-UGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 125462 | 0.66 | 0.730221 |
Target: 5'- aCCGGG--UGGCaGCUCCUggcaGUCAUUCa -3' miRNA: 3'- gGGCCCuaACCGgCGGGGG----UAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 51431 | 0.66 | 0.73961 |
Target: 5'- gCCCaGGGAcUGGCUGUCUCCuaccUC-CUCc -3' miRNA: 3'- -GGG-CCCUaACCGGCGGGGGu---AGuGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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