miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 91936 0.66 0.767228
Target:  5'- cCUCGGuguGAgaGGCa-CCCCCAUCAUUCc -3'
miRNA:   3'- -GGGCC---CUaaCCGgcGGGGGUAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 95911 0.67 0.682266
Target:  5'- gCCCGGGGcuccUGGucuuCCGCCUCCucGUC-CUCg -3'
miRNA:   3'- -GGGCCCUa---ACC----GGCGGGGG--UAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 103950 0.69 0.594164
Target:  5'- gCCGGGAggugcugGGUCGCCugaCCCucuugCACUCc -3'
miRNA:   3'- gGGCCCUaa-----CCGGCGG---GGGua---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 104264 0.78 0.19692
Target:  5'- gCCCGGGggUGGCaGCCCCC-UC-CUCc -3'
miRNA:   3'- -GGGCCCuaACCGgCGGGGGuAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 116169 0.67 0.682266
Target:  5'- gCCGGGAUgugaGGCCucagcGCCCCC-UC-CUg -3'
miRNA:   3'- gGGCCCUAa---CCGG-----CGGGGGuAGuGAg -5'
33294 3' -60.5 NC_007605.1 + 125462 0.66 0.730221
Target:  5'- aCCGGG--UGGCaGCUCCUggcaGUCAUUCa -3'
miRNA:   3'- gGGCCCuaACCGgCGGGGG----UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 125706 0.67 0.697763
Target:  5'- cUCCGGGAgaucaggacgagGGCCGCCaCCAaccUCACcCa -3'
miRNA:   3'- -GGGCCCUaa----------CCGGCGGgGGU---AGUGaG- -5'
33294 3' -60.5 NC_007605.1 + 136358 0.67 0.67253
Target:  5'- gCUGGGAUauUGGCCacaCCCCUGUCcugcCUCa -3'
miRNA:   3'- gGGCCCUA--ACCGGc--GGGGGUAGu---GAG- -5'
33294 3' -60.5 NC_007605.1 + 137311 0.69 0.60394
Target:  5'- uCCCGGGGUccagaguucccGGCUGCUCCCG-C-CUCa -3'
miRNA:   3'- -GGGCCCUAa----------CCGGCGGGGGUaGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 137655 0.67 0.711217
Target:  5'- aCCUGGGugcacugGGCCcuGCUCCUaAUCACUUg -3'
miRNA:   3'- -GGGCCCuaa----CCGG--CGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 140833 0.75 0.298463
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCga-GCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 140934 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141036 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141138 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141240 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141342 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141444 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141546 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141648 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141750 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.