Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33294 | 3' | -60.5 | NC_007605.1 | + | 141852 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141953 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142055 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142157 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142259 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142361 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142463 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142565 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142667 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142694 | 0.67 | 0.701618 |
Target: 5'- aCCGGGuccgcugGGuCCGCUCCC--CGCUCc -3' miRNA: 3'- gGGCCCuaa----CC-GGCGGGGGuaGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142769 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142871 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142972 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 143074 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 143176 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 143278 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 144057 | 0.69 | 0.555377 |
Target: 5'- cUuuGGGAUgcaucacuuUGaGCCacuaaGCCCCCGUUGCUCg -3' miRNA: 3'- -GggCCCUA---------AC-CGG-----CGGGGGUAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 148750 | 0.67 | 0.691965 |
Target: 5'- cCCUGGuGAgcccuuGCCGCUCCCcgCAUUCc -3' miRNA: 3'- -GGGCC-CUaac---CGGCGGGGGuaGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 151279 | 0.66 | 0.743342 |
Target: 5'- gCCCaGGGGggcaaauugcgugucUggGGCCGCCugagCCCAUC-CUCg -3' miRNA: 3'- -GGG-CCCU---------------Aa-CCGGCGG----GGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 153242 | 0.72 | 0.422499 |
Target: 5'- gCCGGGuccucGGCCaucuccgucuuucucGCCCCCuUCACUCc -3' miRNA: 3'- gGGCCCuaa--CCGG---------------CGGGGGuAGUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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