Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33294 | 3' | -60.5 | NC_007605.1 | + | 141138 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141036 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 140934 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 140833 | 0.75 | 0.298463 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCga-GCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 137655 | 0.67 | 0.711217 |
Target: 5'- aCCUGGGugcacugGGCCcuGCUCCUaAUCACUUg -3' miRNA: 3'- -GGGCCCuaa----CCGG--CGGGGG-UAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 137311 | 0.69 | 0.60394 |
Target: 5'- uCCCGGGGUccagaguucccGGCUGCUCCCG-C-CUCa -3' miRNA: 3'- -GGGCCCUAa----------CCGGCGGGGGUaGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 136358 | 0.67 | 0.67253 |
Target: 5'- gCUGGGAUauUGGCCacaCCCCUGUCcugcCUCa -3' miRNA: 3'- gGGCCCUA--ACCGGc--GGGGGUAGu---GAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 125706 | 0.67 | 0.697763 |
Target: 5'- cUCCGGGAgaucaggacgagGGCCGCCaCCAaccUCACcCa -3' miRNA: 3'- -GGGCCCUaa----------CCGGCGGgGGU---AGUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 125462 | 0.66 | 0.730221 |
Target: 5'- aCCGGG--UGGCaGCUCCUggcaGUCAUUCa -3' miRNA: 3'- gGGCCCuaACCGgCGGGGG----UAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 116169 | 0.67 | 0.682266 |
Target: 5'- gCCGGGAUgugaGGCCucagcGCCCCC-UC-CUg -3' miRNA: 3'- gGGCCCUAa---CCGG-----CGGGGGuAGuGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 104264 | 0.78 | 0.19692 |
Target: 5'- gCCCGGGggUGGCaGCCCCC-UC-CUCc -3' miRNA: 3'- -GGGCCCuaACCGgCGGGGGuAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 103950 | 0.69 | 0.594164 |
Target: 5'- gCCGGGAggugcugGGUCGCCugaCCCucuugCACUCc -3' miRNA: 3'- gGGCCCUaa-----CCGGCGG---GGGua---GUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 95911 | 0.67 | 0.682266 |
Target: 5'- gCCCGGGGcuccUGGucuuCCGCCUCCucGUC-CUCg -3' miRNA: 3'- -GGGCCCUa---ACC----GGCGGGGG--UAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 91936 | 0.66 | 0.767228 |
Target: 5'- cCUCGGuguGAgaGGCa-CCCCCAUCAUUCc -3' miRNA: 3'- -GGGCC---CUaaCCGgcGGGGGUAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 78781 | 0.74 | 0.305155 |
Target: 5'- uCUCGGGucUUGGCacgGCCCCCAagaCACUCa -3' miRNA: 3'- -GGGCCCu-AACCGg--CGGGGGUa--GUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 64913 | 0.67 | 0.67253 |
Target: 5'- uCCCaucc-UGGCCaGCCCCCGUCACc- -3' miRNA: 3'- -GGGcccuaACCGG-CGGGGGUAGUGag -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 61123 | 0.67 | 0.691965 |
Target: 5'- aCCCGGGccc-GCCGUCCUCucgaGCUCa -3' miRNA: 3'- -GGGCCCuaacCGGCGGGGGuag-UGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 59140 | 0.75 | 0.278443 |
Target: 5'- cCCCGGGugcgcUGGCUuuGCCCCCAgucgccgUUACUCa -3' miRNA: 3'- -GGGCCCua---ACCGG--CGGGGGU-------AGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 59134 | 0.66 | 0.748913 |
Target: 5'- uCCUGGcc--GGCCGCCCCCugacCUCc -3' miRNA: 3'- -GGGCCcuaaCCGGCGGGGGuaguGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 58327 | 0.73 | 0.378352 |
Target: 5'- aCCGGGcgUccccGCCGCcuCCCCAUCACUg -3' miRNA: 3'- gGGCCCuaAc---CGGCG--GGGGUAGUGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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