Results 61 - 80 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33294 | 3' | -60.5 | NC_007605.1 | + | 55953 | 0.7 | 0.498744 |
Target: 5'- gCCGGug-UGGCCucggccccaggcGCCCCCAUCuCUCc -3' miRNA: 3'- gGGCCcuaACCGG------------CGGGGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 51431 | 0.66 | 0.73961 |
Target: 5'- gCCCaGGGAcUGGCUGUCUCCuaccUC-CUCc -3' miRNA: 3'- -GGG-CCCUaACCGGCGGGGGu---AGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 51381 | 1.1 | 0.001114 |
Target: 5'- cCCCGGGAUUGGCCGCCCCCAUCACUCu -3' miRNA: 3'- -GGGCCCUAACCGGCGGGGGUAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 50734 | 0.75 | 0.272835 |
Target: 5'- cCCUGGGGUccggcuUGGCCGCCCCgGcgCACa- -3' miRNA: 3'- -GGGCCCUA------ACCGGCGGGGgUa-GUGag -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 50585 | 0.68 | 0.623542 |
Target: 5'- gCCaCGGGGgcgcUGGCgGCCggcgCCCGUC-CUCg -3' miRNA: 3'- -GG-GCCCUa---ACCGgCGG----GGGUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 50377 | 0.68 | 0.652974 |
Target: 5'- cCCCGaGGAcgGGCgccggccgccagCGCCCCCGUgGCc- -3' miRNA: 3'- -GGGC-CCUaaCCG------------GCGGGGGUAgUGag -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 49042 | 0.68 | 0.623542 |
Target: 5'- gCCCGGauucggGGCCGCCagCCCGagcgggCGCUCg -3' miRNA: 3'- -GGGCCcuaa--CCGGCGG--GGGUa-----GUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 42971 | 0.69 | 0.595141 |
Target: 5'- gCCGGGucAUUGGCauguuauucuuguaaGCCCCCAUgGC-Cg -3' miRNA: 3'- gGGCCC--UAACCGg--------------CGGGGGUAgUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 41241 | 0.69 | 0.555377 |
Target: 5'- cUuuGGGAUgcaucacuuUGaGCCacuaaGCCCCCGUUGCUCg -3' miRNA: 3'- -GggCCCUA---------AC-CGG-----CGGGGGUAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 40006 | 0.66 | 0.767228 |
Target: 5'- gCUGGGGUccaggGGaccaCGCCCCCAcccugCAUUCc -3' miRNA: 3'- gGGCCCUAa----CCg---GCGGGGGUa----GUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39858 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39733 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39608 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39483 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39358 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39233 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 38984 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 38859 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 38734 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 38609 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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