miRNA display CGI


Results 101 - 114 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 55953 0.7 0.498744
Target:  5'- gCCGGug-UGGCCucggccccaggcGCCCCCAUCuCUCc -3'
miRNA:   3'- gGGCCcuaACCGG------------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 3370 0.72 0.410757
Target:  5'- uCCCGuGGcccUGGCCGgCCCCAUUuCUCc -3'
miRNA:   3'- -GGGC-CCua-ACCGGCgGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 162988 0.72 0.402495
Target:  5'- -gCGGGGgcGGCCGCCaguCCCAugugcUCGCUCu -3'
miRNA:   3'- ggGCCCUaaCCGGCGG---GGGU-----AGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 78781 0.74 0.305155
Target:  5'- uCUCGGGucUUGGCacgGCCCCCAagaCACUCa -3'
miRNA:   3'- -GGGCCCu-AACCGg--CGGGGGUa--GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 140833 0.75 0.298463
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCga-GCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 140934 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141036 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141138 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141240 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141342 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141444 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141546 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141648 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 51381 1.1 0.001114
Target:  5'- cCCCGGGAUUGGCCGCCCCCAUCACUCu -3'
miRNA:   3'- -GGGCCCUAACCGGCGGGGGUAGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.