miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 141444 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141546 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142463 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 143176 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 137311 0.69 0.60394
Target:  5'- uCCCGGGGUccagaguucccGGCUGCUCCCG-C-CUCa -3'
miRNA:   3'- -GGGCCCUAa----------CCGGCGGGGGUaGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 140934 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141750 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 143278 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141036 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 50734 0.75 0.272835
Target:  5'- cCCUGGGGUccggcuUGGCCGCCCCgGcgCACa- -3'
miRNA:   3'- -GGGCCCUA------ACCGGCGGGGgUa-GUGag -5'
33294 3' -60.5 NC_007605.1 + 141648 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141342 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142055 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142361 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142769 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 143074 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 170759 0.68 0.643169
Target:  5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3'
miRNA:   3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 50585 0.68 0.623542
Target:  5'- gCCaCGGGGgcgcUGGCgGCCggcgCCCGUC-CUCg -3'
miRNA:   3'- -GG-GCCCUa---ACCGgCGG----GGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 3370 0.72 0.410757
Target:  5'- uCCCGuGGcccUGGCCGgCCCCAUUuCUCc -3'
miRNA:   3'- -GGGC-CCua-ACCGGCgGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 140833 0.75 0.298463
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCga-GCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.