miRNA display CGI


Results 81 - 100 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 153242 0.72 0.422499
Target:  5'- gCCGGGuccucGGCCaucuccgucuuucucGCCCCCuUCACUCc -3'
miRNA:   3'- gGGCCCuaa--CCGG---------------CGGGGGuAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 58327 0.73 0.378352
Target:  5'- aCCGGGcgUccccGCCGCcuCCCCAUCACUg -3'
miRNA:   3'- gGGCCCuaAc---CGGCG--GGGGUAGUGAg -5'
33294 3' -60.5 NC_007605.1 + 28132 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 25063 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 15857 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 41241 0.69 0.555377
Target:  5'- cUuuGGGAUgcaucacuuUGaGCCacuaaGCCCCCGUUGCUCg -3'
miRNA:   3'- -GggCCCUA---------AC-CGG-----CGGGGGUAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 36334 0.66 0.776223
Target:  5'- uUgGGGAaaacacggGGgUGCCCCCAcCACUCc -3'
miRNA:   3'- gGgCCCUaa------CCgGCGGGGGUaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 32226 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 142694 0.67 0.701618
Target:  5'- aCCGGGuccgcugGGuCCGCUCCC--CGCUCc -3'
miRNA:   3'- gGGCCCuaa----CC-GGCGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 125706 0.67 0.697763
Target:  5'- cUCCGGGAgaucaggacgagGGCCGCCaCCAaccUCACcCa -3'
miRNA:   3'- -GGGCCCUaa----------CCGGCGGgGGU---AGUGaG- -5'
33294 3' -60.5 NC_007605.1 + 148750 0.67 0.691965
Target:  5'- cCCUGGuGAgcccuuGCCGCUCCCcgCAUUCc -3'
miRNA:   3'- -GGGCC-CUaac---CGGCGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 116169 0.67 0.682266
Target:  5'- gCCGGGAUgugaGGCCucagcGCCCCC-UC-CUg -3'
miRNA:   3'- gGGCCCUAa---CCGG-----CGGGGGuAGuGAg -5'
33294 3' -60.5 NC_007605.1 + 160011 0.67 0.679349
Target:  5'- gCCCGGGAccgcgcccuccucugGGCCGCCCggCC-UCGCc- -3'
miRNA:   3'- -GGGCCCUaa-------------CCGGCGGG--GGuAGUGag -5'
33294 3' -60.5 NC_007605.1 + 50377 0.68 0.652974
Target:  5'- cCCCGaGGAcgGGCgccggccgccagCGCCCCCGUgGCc- -3'
miRNA:   3'- -GGGC-CCUaaCCG------------GCGGGGGUAgUGag -5'
33294 3' -60.5 NC_007605.1 + 19951 0.68 0.643169
Target:  5'- cCCCGaGGGUaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAaCCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 103950 0.69 0.594164
Target:  5'- gCCGGGAggugcugGGUCGCCugaCCCucuugCACUCc -3'
miRNA:   3'- gGGCCCUaa-----CCGGCGG---GGGua---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 35295 0.69 0.594164
Target:  5'- cCCCGaGGGUgaGGCCcaGCCCCCucUCGCcCa -3'
miRNA:   3'- -GGGC-CCUAa-CCGG--CGGGGGu-AGUGaG- -5'
33294 3' -60.5 NC_007605.1 + 159846 0.69 0.583441
Target:  5'- -gCGGGAaUGGCCGCcacccucccccugCCCCGUUGCa- -3'
miRNA:   3'- ggGCCCUaACCGGCG-------------GGGGUAGUGag -5'
33294 3' -60.5 NC_007605.1 + 14970 0.69 0.555377
Target:  5'- uCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 144057 0.69 0.555377
Target:  5'- cUuuGGGAUgcaucacuuUGaGCCacuaaGCCCCCGUUGCUCg -3'
miRNA:   3'- -GggCCCUA---------AC-CGG-----CGGGGGUAGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.