miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 38609 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 171042 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 170520 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 171580 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 169982 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 15698 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 24905 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 18767 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 27974 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 59134 0.66 0.748913
Target:  5'- uCCUGGcc--GGCCGCCCCCugacCUCc -3'
miRNA:   3'- -GGGCCcuaaCCGGCGGGGGuaguGAG- -5'
33294 3' -60.5 NC_007605.1 + 12629 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 31043 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 21836 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 151279 0.66 0.743342
Target:  5'- gCCCaGGGGggcaaauugcgugucUggGGCCGCCugagCCCAUC-CUCg -3'
miRNA:   3'- -GGG-CCCU---------------Aa-CCGGCGG----GGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 51431 0.66 0.73961
Target:  5'- gCCCaGGGAcUGGCUGUCUCCuaccUC-CUCc -3'
miRNA:   3'- -GGG-CCCUaACCGGCGGGGGu---AGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 125462 0.66 0.730221
Target:  5'- aCCGGG--UGGCaGCUCCUggcaGUCAUUCa -3'
miRNA:   3'- gGGCCCuaACCGgCGGGGG----UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 2886 0.67 0.720754
Target:  5'- gCCGGGcc--GCCGCCCUggCAUCuGCUCc -3'
miRNA:   3'- gGGCCCuaacCGGCGGGG--GUAG-UGAG- -5'
33294 3' -60.5 NC_007605.1 + 137655 0.67 0.711217
Target:  5'- aCCUGGGugcacugGGCCcuGCUCCUaAUCACUUg -3'
miRNA:   3'- -GGGCCCuaa----CCGG--CGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142694 0.67 0.701618
Target:  5'- aCCGGGuccgcugGGuCCGCUCCC--CGCUCc -3'
miRNA:   3'- gGGCCCuaa----CC-GGCGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 125706 0.67 0.697763
Target:  5'- cUCCGGGAgaucaggacgagGGCCGCCaCCAaccUCACcCa -3'
miRNA:   3'- -GGGCCCUaa----------CCGGCGGgGGU---AGUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.