miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 5' -48.9 NC_007605.1 + 10955 0.66 0.999587
Target:  5'- aCUGGUgGggGGCAucuggGGGCCCUug-UUGg -3'
miRNA:   3'- -GGCUAaCuaCCGU-----UCCGGGAuaaAGC- -5'
33294 5' -48.9 NC_007605.1 + 113060 0.66 0.999587
Target:  5'- uUGggUGGUGGCAgcAGGCgCUGUaacgugUCGc -3'
miRNA:   3'- gGCuaACUACCGU--UCCGgGAUAa-----AGC- -5'
33294 5' -48.9 NC_007605.1 + 77904 0.66 0.999578
Target:  5'- gUGGUUGGUGGCAuuuGCCUguggacuUGUUUCu -3'
miRNA:   3'- gGCUAACUACCGUuc-CGGG-------AUAAAGc -5'
33294 5' -48.9 NC_007605.1 + 130126 0.66 0.999484
Target:  5'- cCCG-UUGAUGGaCAGGGCCa------- -3'
miRNA:   3'- -GGCuAACUACC-GUUCCGGgauaaagc -5'
33294 5' -48.9 NC_007605.1 + 60570 0.67 0.998823
Target:  5'- gCGGcgGGUGGCcAGGCCCa------ -3'
miRNA:   3'- gGCUaaCUACCGuUCCGGGauaaagc -5'
33294 5' -48.9 NC_007605.1 + 111008 0.67 0.998281
Target:  5'- gCCGAg-GAUGGgcaggaCAAGGCCCUGg--UGg -3'
miRNA:   3'- -GGCUaaCUACC------GUUCCGGGAUaaaGC- -5'
33294 5' -48.9 NC_007605.1 + 125911 0.67 0.997543
Target:  5'- -aGGUUGGUGGC--GGCCCUcg-UCc -3'
miRNA:   3'- ggCUAACUACCGuuCCGGGAuaaAGc -5'
33294 5' -48.9 NC_007605.1 + 134870 0.68 0.996558
Target:  5'- uCCGAgagGAUGGCAcGGUCCa------ -3'
miRNA:   3'- -GGCUaa-CUACCGUuCCGGGauaaagc -5'
33294 5' -48.9 NC_007605.1 + 2087 0.68 0.995955
Target:  5'- aCCaGAcugGAUGGCAAGGCCUUc----- -3'
miRNA:   3'- -GG-CUaa-CUACCGUUCCGGGAuaaagc -5'
33294 5' -48.9 NC_007605.1 + 148122 0.69 0.99361
Target:  5'- cCCGAUggccagGAaGGUAAGGCCCacgggUCa -3'
miRNA:   3'- -GGCUAa-----CUaCCGUUCCGGGauaa-AGc -5'
33294 5' -48.9 NC_007605.1 + 45266 0.69 0.991515
Target:  5'- aCCGAUagcaUGGUGGCcuGGCCCc------ -3'
miRNA:   3'- -GGCUA----ACUACCGuuCCGGGauaaagc -5'
33294 5' -48.9 NC_007605.1 + 62008 0.69 0.991515
Target:  5'- gCCGg--GAUGGCGgcagagauggAGGCCCUGgccgcUCGu -3'
miRNA:   3'- -GGCuaaCUACCGU----------UCCGGGAUaa---AGC- -5'
33294 5' -48.9 NC_007605.1 + 130668 0.69 0.991515
Target:  5'- aCCGAacUGAUGGCAaaggucccAGGCCUUAg---- -3'
miRNA:   3'- -GGCUa-ACUACCGU--------UCCGGGAUaaagc -5'
33294 5' -48.9 NC_007605.1 + 38385 0.7 0.987395
Target:  5'- cCCgGGUUGGUGGCAcuguugcgcccGGCCCUGUa--- -3'
miRNA:   3'- -GG-CUAACUACCGUu----------CCGGGAUAaagc -5'
33294 5' -48.9 NC_007605.1 + 138735 0.7 0.987395
Target:  5'- cCCGGgccGAUGGCuGAGGCCCg------ -3'
miRNA:   3'- -GGCUaa-CUACCG-UUCCGGGauaaagc -5'
33294 5' -48.9 NC_007605.1 + 107269 0.71 0.965704
Target:  5'- cCCGGUcugGGUGGuCAAGGCCCa------ -3'
miRNA:   3'- -GGCUAa--CUACC-GUUCCGGGauaaagc -5'
33294 5' -48.9 NC_007605.1 + 107994 0.72 0.962248
Target:  5'- cCCGggUGAUGGCGugcgcgAGGgCCUAggccUCGg -3'
miRNA:   3'- -GGCuaACUACCGU------UCCgGGAUaa--AGC- -5'
33294 5' -48.9 NC_007605.1 + 104722 0.75 0.880553
Target:  5'- gUCGuggGAUGGCGGGGCCUUGUcugccUCGg -3'
miRNA:   3'- -GGCuaaCUACCGUUCCGGGAUAa----AGC- -5'
33294 5' -48.9 NC_007605.1 + 126264 0.76 0.832516
Target:  5'- cCCGGUUGGUGcccGUggGGCCUggGUUUCGc -3'
miRNA:   3'- -GGCUAACUAC---CGuuCCGGGa-UAAAGC- -5'
33294 5' -48.9 NC_007605.1 + 51345 1.13 0.009284
Target:  5'- cCCGAUUGAUGGCAAGGCCCUAUUUCGg -3'
miRNA:   3'- -GGCUAACUACCGUUCCGGGAUAAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.