Results 21 - 40 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33295 | 3' | -57.7 | NC_007605.1 | + | 20900 | 0.66 | 0.876908 |
Target: 5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3' miRNA: 3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 27038 | 0.66 | 0.876908 |
Target: 5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3' miRNA: 3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 30107 | 0.66 | 0.876908 |
Target: 5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3' miRNA: 3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 14762 | 0.66 | 0.876908 |
Target: 5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3' miRNA: 3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 17831 | 0.66 | 0.876908 |
Target: 5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3' miRNA: 3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 23969 | 0.66 | 0.876908 |
Target: 5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3' miRNA: 3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 33175 | 0.66 | 0.876908 |
Target: 5'- cGGGGGGccCGGGCCGGGuuGGuccAGGg -3' miRNA: 3'- uCCCCUCu-GCCUGGUCCc-CCuuuUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 85907 | 0.66 | 0.876908 |
Target: 5'- uGGGGcaACaGACUGcGGGGAGGAGGg -3' miRNA: 3'- uCCCCucUGcCUGGUcCCCCUUUUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 49885 | 0.66 | 0.874101 |
Target: 5'- cGGGGcGGCGGuggaugagaggAGGGGGAuccGGAGGg -3' miRNA: 3'- uCCCCuCUGCCugg--------UCCCCCU---UUUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 112054 | 0.66 | 0.862551 |
Target: 5'- -aGGGAGugGGucuucaggcACCAGGGaGGuccAGGu -3' miRNA: 3'- ucCCCUCugCC---------UGGUCCC-CCuuuUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 56647 | 0.66 | 0.862551 |
Target: 5'- cGGGcGGAGAUcagGaGGCgGGGGaaGGAGGAGGa -3' miRNA: 3'- -UCC-CCUCUG---C-CUGgUCCC--CCUUUUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 143204 | 0.67 | 0.858089 |
Target: 5'- gGGGGGAGGCcgccgcaaggacgccGGGCCGGcuGGGAGGu-- -3' miRNA: 3'- -UCCCCUCUG---------------CCUGGUCc-CCCUUUucc -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 63609 | 0.67 | 0.858089 |
Target: 5'- cGGGGGuGGCGGuggaguaugcuucgUCGGGGGGcu-GGGc -3' miRNA: 3'- -UCCCCuCUGCCu-------------GGUCCCCCuuuUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 40389 | 0.67 | 0.858089 |
Target: 5'- gGGGGGAGGCcgccgcaaggacgccGGGCCGGcuGGGAGGu-- -3' miRNA: 3'- -UCCCCUCUG---------------CCUGGUCc-CCCUUUucc -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 21301 | 0.67 | 0.855076 |
Target: 5'- cGGaGGGGGCcugaagcccggGGACUAGGGaacuGAGGAGGg -3' miRNA: 3'- uCC-CCUCUG-----------CCUGGUCCCc---CUUUUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 46537 | 0.67 | 0.855076 |
Target: 5'- uAGGGG-GGCGaGAUUGGGGuGGAucauAGGc -3' miRNA: 3'- -UCCCCuCUGC-CUGGUCCC-CCUuu--UCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 18232 | 0.67 | 0.855076 |
Target: 5'- cGGaGGGGGCcugaagcccggGGACUAGGGaacuGAGGAGGg -3' miRNA: 3'- uCC-CCUCUG-----------CCUGGUCCCc---CUUUUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 170619 | 0.67 | 0.855076 |
Target: 5'- -cGGcGGGCGGGCggCGGGGGGucGGGGu -3' miRNA: 3'- ucCCcUCUGCCUG--GUCCCCCuuUUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 24370 | 0.67 | 0.855076 |
Target: 5'- cGGaGGGGGCcugaagcccggGGACUAGGGaacuGAGGAGGg -3' miRNA: 3'- uCC-CCUCUG-----------CCUGGUCCCc---CUUUUCC- -5' |
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33295 | 3' | -57.7 | NC_007605.1 | + | 30508 | 0.67 | 0.855076 |
Target: 5'- cGGaGGGGGCcugaagcccggGGACUAGGGaacuGAGGAGGg -3' miRNA: 3'- uCC-CCUCUG-----------CCUGGUCCCc---CUUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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