miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33295 5' -62.6 NC_007605.1 + 129433 0.66 0.654219
Target:  5'- cGCCUCcaaugaGGCCaCUguaaacCCCGGCCUugGGGu -3'
miRNA:   3'- cCGGAGa-----CCGG-GA------GGGUCGGGugUCU- -5'
33295 5' -62.6 NC_007605.1 + 31631 0.66 0.654219
Target:  5'- cGGCCUCUggGGCCg-CCCGGgCUGcCGGGg -3'
miRNA:   3'- -CCGGAGA--CCGGgaGGGUCgGGU-GUCU- -5'
33295 5' -62.6 NC_007605.1 + 13217 0.66 0.654219
Target:  5'- cGGCCUCUggGGCCg-CCCGGgCUGcCGGGg -3'
miRNA:   3'- -CCGGAGA--CCGGgaGGGUCgGGU-GUCU- -5'
33295 5' -62.6 NC_007605.1 + 25493 0.66 0.654219
Target:  5'- cGGCCUCUggGGCCg-CCCGGgCUGcCGGGg -3'
miRNA:   3'- -CCGGAGA--CCGGgaGGGUCgGGU-GUCU- -5'
33295 5' -62.6 NC_007605.1 + 16286 0.66 0.654219
Target:  5'- cGGCCUCUggGGCCg-CCCGGgCUGcCGGGg -3'
miRNA:   3'- -CCGGAGA--CCGGgaGGGUCgGGU-GUCU- -5'
33295 5' -62.6 NC_007605.1 + 20916 0.66 0.654219
Target:  5'- -aCCUCUGGCCCgauaCCggggGGCCCGggcCGGGu -3'
miRNA:   3'- ccGGAGACCGGGag--GG----UCGGGU---GUCU- -5'
33295 5' -62.6 NC_007605.1 + 54743 0.66 0.654219
Target:  5'- cGGcCCUCUGGCCagacuggacgCUUGGCCCGCc-- -3'
miRNA:   3'- -CC-GGAGACCGGga--------GGGUCGGGUGucu -5'
33295 5' -62.6 NC_007605.1 + 23985 0.66 0.654219
Target:  5'- -aCCUCUGGCCCgauaCCggggGGCCCGggcCGGGu -3'
miRNA:   3'- ccGGAGACCGGGag--GG----UCGGGU---GUCU- -5'
33295 5' -62.6 NC_007605.1 + 33191 0.66 0.654219
Target:  5'- -aCCUCUGGCCCgauaCCggggGGCCCGggcCGGGu -3'
miRNA:   3'- ccGGAGACCGGGag--GG----UCGGGU---GUCU- -5'
33295 5' -62.6 NC_007605.1 + 22424 0.66 0.654219
Target:  5'- cGGCCUCUggGGCCg-CCCGGgCUGcCGGGg -3'
miRNA:   3'- -CCGGAGA--CCGGgaGGGUCgGGU-GUCU- -5'
33295 5' -62.6 NC_007605.1 + 17847 0.66 0.654219
Target:  5'- -aCCUCUGGCCCgauaCCggggGGCCCGggcCGGGu -3'
miRNA:   3'- ccGGAGACCGGGag--GG----UCGGGU---GUCU- -5'
33295 5' -62.6 NC_007605.1 + 27054 0.66 0.654219
Target:  5'- -aCCUCUGGCCCgauaCCggggGGCCCGggcCGGGu -3'
miRNA:   3'- ccGGAGACCGGGag--GG----UCGGGU---GUCU- -5'
33295 5' -62.6 NC_007605.1 + 34700 0.66 0.654219
Target:  5'- cGGCCUCUggGGCCg-CCCGGgCUGcCGGGg -3'
miRNA:   3'- -CCGGAGA--CCGGgaGGGUCgGGU-GUCU- -5'
33295 5' -62.6 NC_007605.1 + 162756 0.66 0.654219
Target:  5'- aGGCacacGGCCggggCCCGGCCCucGCAGAg -3'
miRNA:   3'- -CCGgagaCCGGga--GGGUCGGG--UGUCU- -5'
33295 5' -62.6 NC_007605.1 + 14778 0.66 0.654219
Target:  5'- -aCCUCUGGCCCgauaCCggggGGCCCGggcCGGGu -3'
miRNA:   3'- ccGGAGACCGGGag--GG----UCGGGU---GUCU- -5'
33295 5' -62.6 NC_007605.1 + 28562 0.66 0.654219
Target:  5'- cGGCCUCUggGGCCg-CCCGGgCUGcCGGGg -3'
miRNA:   3'- -CCGGAGA--CCGGgaGGGUCgGGU-GUCU- -5'
33295 5' -62.6 NC_007605.1 + 19355 0.66 0.654219
Target:  5'- cGGCCUCUggGGCCg-CCCGGgCUGcCGGGg -3'
miRNA:   3'- -CCGGAGA--CCGGgaGGGUCgGGU-GUCU- -5'
33295 5' -62.6 NC_007605.1 + 75159 0.66 0.645433
Target:  5'- cGCCUCccgUGGUgcggcagccggagcaCUCUgGGCCCACGGAg -3'
miRNA:   3'- cCGGAG---ACCGg--------------GAGGgUCGGGUGUCU- -5'
33295 5' -62.6 NC_007605.1 + 61157 0.66 0.644456
Target:  5'- cGGCagcgacCUGGCCCUCCCuuCCC-CcGAg -3'
miRNA:   3'- -CCGga----GACCGGGAGGGucGGGuGuCU- -5'
33295 5' -62.6 NC_007605.1 + 168791 0.66 0.644456
Target:  5'- gGGuCCUCgagggGGCCgUCgCgGGCCCGguGGg -3'
miRNA:   3'- -CC-GGAGa----CCGGgAG-GgUCGGGUguCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.