miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 3' -55 NC_007605.1 + 12578 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 125610 0.67 0.944525
Target:  5'- cCCCCcuGUCCGCccuuCAGCGggCGGGAGg -3'
miRNA:   3'- -GGGGcuUAGGUGc---GUUGCagGUCCUC- -5'
33296 3' -55 NC_007605.1 + 15647 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 152644 0.68 0.895608
Target:  5'- cCCCCGggUCCAC-CGugGggacCCuGGuGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUugCa---GGuCCuC- -5'
33296 3' -55 NC_007605.1 + 150807 0.68 0.901961
Target:  5'- gCCCGGG-CCGCcCAcCGcCCGGGAGg -3'
miRNA:   3'- gGGGCUUaGGUGcGUuGCaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 157668 0.68 0.895608
Target:  5'- aCCUGcucuUCgAUGCAuugaagGCGUCCGGGAGc -3'
miRNA:   3'- gGGGCuu--AGgUGCGU------UGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 19419 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 137088 0.68 0.889031
Target:  5'- -gCCGAGUCCACGaucccugaGGCGggagcagCCGGGAa -3'
miRNA:   3'- ggGGCUUAGGUGCg-------UUGCa------GGUCCUc -5'
33296 3' -55 NC_007605.1 + 13281 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 16350 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 52579 0.68 0.895608
Target:  5'- -gCCGAGUCCuGCGUAgaacgaugggGCGcCCAGGAa -3'
miRNA:   3'- ggGGCUUAGG-UGCGU----------UGCaGGUCCUc -5'
33296 3' -55 NC_007605.1 + 22488 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 34764 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 25557 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 28626 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 31695 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 10668 0.68 0.908089
Target:  5'- aCCaCG-GUCCAcccCGCccucaAGCGUCCGGGAGc -3'
miRNA:   3'- gGG-GCuUAGGU---GCG-----UUGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 54034 0.69 0.852941
Target:  5'- cCCUCGAggCCGCccuggcccggGCAGCGgCCGGGAa -3'
miRNA:   3'- -GGGGCUuaGGUG----------CGUUGCaGGUCCUc -5'
33296 3' -55 NC_007605.1 + 123301 0.69 0.875222
Target:  5'- cCCCCGGGccUCUuggaAUGCAGCuGgggCCAGGGGa -3'
miRNA:   3'- -GGGGCUU--AGG----UGCGUUG-Ca--GGUCCUC- -5'
33296 3' -55 NC_007605.1 + 46291 0.69 0.882234
Target:  5'- uUCUCGAGUCUACGaaGAC-UCCGGGGGc -3'
miRNA:   3'- -GGGGCUUAGGUGCg-UUGcAGGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.