Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33296 | 3' | -55 | NC_007605.1 | + | 35255 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 32186 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 26048 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 22979 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 19911 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 16842 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 13773 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 104747 | 0.7 | 0.845118 |
Target: 5'- gCCUCGggUCuCGcCGCuaguugguccAGgGUCCAGGAGa -3' miRNA: 3'- -GGGGCuuAG-GU-GCG----------UUgCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 29117 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 62982 | 0.7 | 0.820549 |
Target: 5'- gUCCGAAUUCACGCGggACGUUCGuGGGc -3' miRNA: 3'- gGGGCUUAGGUGCGU--UGCAGGU-CCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 100227 | 0.7 | 0.812017 |
Target: 5'- cCUCCGGAUcCCACGU-ACGcCCGGGcAGg -3' miRNA: 3'- -GGGGCUUA-GGUGCGuUGCaGGUCC-UC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 47381 | 0.69 | 0.86057 |
Target: 5'- aCCCCGAGU--GCGUGACG-CCAGGc- -3' miRNA: 3'- -GGGGCUUAggUGCGUUGCaGGUCCuc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 54034 | 0.69 | 0.852941 |
Target: 5'- cCCUCGAggCCGCccuggcccggGCAGCGgCCGGGAa -3' miRNA: 3'- -GGGGCUuaGGUG----------CGUUGCaGGUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 116889 | 0.69 | 0.882234 |
Target: 5'- gCCCGcGUCUACGUGGCGgu-GGGAGg -3' miRNA: 3'- gGGGCuUAGGUGCGUUGCaggUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 137896 | 0.69 | 0.875222 |
Target: 5'- cCUCCGggUCCACuGCAAUuacucUgCAGGGGa -3' miRNA: 3'- -GGGGCuuAGGUG-CGUUGc----AgGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 150332 | 0.69 | 0.863566 |
Target: 5'- aCCCCGGAggagcCCAUGCAgcacuaGCGUCCcggcgcucgucguucAGGAa -3' miRNA: 3'- -GGGGCUUa----GGUGCGU------UGCAGG---------------UCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 46291 | 0.69 | 0.882234 |
Target: 5'- uUCUCGAGUCUACGaaGAC-UCCGGGGGc -3' miRNA: 3'- -GGGGCUUAGGUGCg-UUGcAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 123301 | 0.69 | 0.875222 |
Target: 5'- cCCCCGGGccUCUuggaAUGCAGCuGgggCCAGGGGa -3' miRNA: 3'- -GGGGCUU--AGG----UGCGUUG-Ca--GGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 16350 | 0.68 | 0.913988 |
Target: 5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3' miRNA: 3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 19419 | 0.68 | 0.913988 |
Target: 5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3' miRNA: 3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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