Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33296 | 3' | -55 | NC_007605.1 | + | 34141 | 0.66 | 0.956703 |
Target: 5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3' miRNA: 3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 125299 | 0.66 | 0.956703 |
Target: 5'- uUCUGAGUCCGgGCAcCGUCCcuggcccccuuGGAGu -3' miRNA: 3'- gGGGCUUAGGUgCGUuGCAGGu----------CCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 4419 | 0.66 | 0.960321 |
Target: 5'- uCCCUGGAUCUugccaucccCGCAACGcaccgcaaUCAGGAGa -3' miRNA: 3'- -GGGGCUUAGGu--------GCGUUGCa-------GGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 48821 | 0.66 | 0.960321 |
Target: 5'- -aCCGcAGUCCAUGCAaaacACGgCCaaGGGAGg -3' miRNA: 3'- ggGGC-UUAGGUGCGU----UGCaGG--UCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 48857 | 0.66 | 0.961708 |
Target: 5'- gCCCCGAAUCCGgGCAgugcugccgcacaacGCGgCCuacGAGc -3' miRNA: 3'- -GGGGCUUAGGUgCGU---------------UGCaGGuc-CUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 170352 | 0.66 | 0.963724 |
Target: 5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3' miRNA: 3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 170874 | 0.66 | 0.963724 |
Target: 5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3' miRNA: 3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 171412 | 0.66 | 0.963724 |
Target: 5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3' miRNA: 3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 169815 | 0.66 | 0.963724 |
Target: 5'- cCCCCG-AUCCcCGgAACGUCCGc--- -3' miRNA: 3'- -GGGGCuUAGGuGCgUUGCAGGUccuc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 61938 | 0.66 | 0.963724 |
Target: 5'- -gCCGGAgCCGgGCGGCGUcaaaggCCAGGAc -3' miRNA: 3'- ggGGCUUaGGUgCGUUGCA------GGUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 3879 | 0.66 | 0.963724 |
Target: 5'- --gCGuAGUCCGCcaGCGGCagGUCCAGGGGa -3' miRNA: 3'- gggGC-UUAGGUG--CGUUG--CAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 134179 | 0.65 | 0.966919 |
Target: 5'- gCCCCGGgcacGUUCAgCGCGGcCGUCguGGGc -3' miRNA: 3'- -GGGGCU----UAGGU-GCGUU-GCAGguCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 116609 | 0.65 | 0.966919 |
Target: 5'- gUCUGAcauUCCACcccgGCcAgGUCCAGGAGg -3' miRNA: 3'- gGGGCUu--AGGUG----CGuUgCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 60555 | 0.65 | 0.966919 |
Target: 5'- aCCCGAGaCCAgaaaGCGGCGgguggCCAGGc- -3' miRNA: 3'- gGGGCUUaGGUg---CGUUGCa----GGUCCuc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 132627 | 0.65 | 0.966919 |
Target: 5'- aCCCCGGgugggAUCCAUGgCugGAUuUCCAGGAa -3' miRNA: 3'- -GGGGCU-----UAGGUGC-G--UUGcAGGUCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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