miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 3' -55 NC_007605.1 + 127177 0.66 0.956703
Target:  5'- cUCCUGAggcacAUCCGC-CGACGUCUGGGc- -3'
miRNA:   3'- -GGGGCU-----UAGGUGcGUUGCAGGUCCuc -5'
33296 3' -55 NC_007605.1 + 125610 0.67 0.944525
Target:  5'- cCCCCcuGUCCGCccuuCAGCGggCGGGAGg -3'
miRNA:   3'- -GGGGcuUAGGUGc---GUUGCagGUCCUC- -5'
33296 3' -55 NC_007605.1 + 125299 0.66 0.956703
Target:  5'- uUCUGAGUCCGgGCAcCGUCCcuggcccccuuGGAGu -3'
miRNA:   3'- gGGGCUUAGGUgCGUuGCAGGu----------CCUC- -5'
33296 3' -55 NC_007605.1 + 124337 0.66 0.948809
Target:  5'- aCCCGGAgcCCAUGUucucGGCccgGUCCAGGAa -3'
miRNA:   3'- gGGGCUUa-GGUGCG----UUG---CAGGUCCUc -5'
33296 3' -55 NC_007605.1 + 123301 0.69 0.875222
Target:  5'- cCCCCGGGccUCUuggaAUGCAGCuGgggCCAGGGGa -3'
miRNA:   3'- -GGGGCUU--AGG----UGCGUUG-Ca--GGUCCUC- -5'
33296 3' -55 NC_007605.1 + 116889 0.69 0.882234
Target:  5'- gCCCGcGUCUACGUGGCGgu-GGGAGg -3'
miRNA:   3'- gGGGCuUAGGUGCGUUGCaggUCCUC- -5'
33296 3' -55 NC_007605.1 + 116609 0.65 0.966919
Target:  5'- gUCUGAcauUCCACcccgGCcAgGUCCAGGAGg -3'
miRNA:   3'- gGGGCUu--AGGUG----CGuUgCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 105574 0.71 0.757785
Target:  5'- gCCCUGA--CCGCGCGuCGaggcCCAGGAGg -3'
miRNA:   3'- -GGGGCUuaGGUGCGUuGCa---GGUCCUC- -5'
33296 3' -55 NC_007605.1 + 104747 0.7 0.845118
Target:  5'- gCCUCGggUCuCGcCGCuaguugguccAGgGUCCAGGAGa -3'
miRNA:   3'- -GGGGCuuAG-GU-GCG----------UUgCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 103687 0.67 0.935272
Target:  5'- uCCCUGAGUUCua-CAAUG-CCAGGGGg -3'
miRNA:   3'- -GGGGCUUAGGugcGUUGCaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 101558 0.71 0.757785
Target:  5'- gCCgCCGAGUUCAgGCGAaccaaGcCCAGGGGg -3'
miRNA:   3'- -GG-GGCUUAGGUgCGUUg----CaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 100227 0.7 0.812017
Target:  5'- cCUCCGGAUcCCACGU-ACGcCCGGGcAGg -3'
miRNA:   3'- -GGGGCUUA-GGUGCGuUGCaGGUCC-UC- -5'
33296 3' -55 NC_007605.1 + 76024 0.7 0.823916
Target:  5'- cCUCCaGAAcagcggcgcuacaacUCCACGCuGCGUCCAucGGAGc -3'
miRNA:   3'- -GGGG-CUU---------------AGGUGCGuUGCAGGU--CCUC- -5'
33296 3' -55 NC_007605.1 + 63785 0.66 0.952867
Target:  5'- cCCCCGGcgCCGC-CGgagagccacGCGUCCAGa-- -3'
miRNA:   3'- -GGGGCUuaGGUGcGU---------UGCAGGUCcuc -5'
33296 3' -55 NC_007605.1 + 62982 0.7 0.820549
Target:  5'- gUCCGAAUUCACGCGggACGUUCGuGGGc -3'
miRNA:   3'- gGGGCUUAGGUGCGU--UGCAGGU-CCUc -5'
33296 3' -55 NC_007605.1 + 61997 0.72 0.71936
Target:  5'- cCCCCGcuggccUCCGCGUAcACGcCCAGGAu -3'
miRNA:   3'- -GGGGCuu----AGGUGCGU-UGCaGGUCCUc -5'
33296 3' -55 NC_007605.1 + 61938 0.66 0.963724
Target:  5'- -gCCGGAgCCGgGCGGCGUcaaaggCCAGGAc -3'
miRNA:   3'- ggGGCUUaGGUgCGUUGCA------GGUCCUc -5'
33296 3' -55 NC_007605.1 + 60555 0.65 0.966919
Target:  5'- aCCCGAGaCCAgaaaGCGGCGgguggCCAGGc- -3'
miRNA:   3'- gGGGCUUaGGUg---CGUUGCa----GGUCCuc -5'
33296 3' -55 NC_007605.1 + 60160 0.66 0.952867
Target:  5'- uCCCCGcacCCAgGCGGCuUCCgcAGGGGg -3'
miRNA:   3'- -GGGGCuuaGGUgCGUUGcAGG--UCCUC- -5'
33296 3' -55 NC_007605.1 + 54229 0.67 0.935272
Target:  5'- -gCCGAgGUCCGgGCGcuggaagagcAgGUCCGGGAGa -3'
miRNA:   3'- ggGGCU-UAGGUgCGU----------UgCAGGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.