miRNA display CGI


Results 41 - 60 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 3' -55 NC_007605.1 + 54034 0.69 0.852941
Target:  5'- cCCUCGAggCCGCccuggcccggGCAGCGgCCGGGAa -3'
miRNA:   3'- -GGGGCUuaGGUG----------CGUUGCaGGUCCUc -5'
33296 3' -55 NC_007605.1 + 53775 0.8 0.302397
Target:  5'- gCCCCGGAUCCACuuGGCGgcugCCAGGGa -3'
miRNA:   3'- -GGGGCUUAGGUGcgUUGCa---GGUCCUc -5'
33296 3' -55 NC_007605.1 + 52579 0.68 0.895608
Target:  5'- -gCCGAGUCCuGCGUAgaacgaugggGCGcCCAGGAa -3'
miRNA:   3'- ggGGCUUAGG-UGCGU----------UGCaGGUCCUc -5'
33296 3' -55 NC_007605.1 + 51673 1.1 0.004236
Target:  5'- cCCCCGAAUCCACGCAACGUCCAGGAGc -3'
miRNA:   3'- -GGGGCUUAGGUGCGUUGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 48857 0.66 0.961708
Target:  5'- gCCCCGAAUCCGgGCAgugcugccgcacaacGCGgCCuacGAGc -3'
miRNA:   3'- -GGGGCUUAGGUgCGU---------------UGCaGGuc-CUC- -5'
33296 3' -55 NC_007605.1 + 48821 0.66 0.960321
Target:  5'- -aCCGcAGUCCAUGCAaaacACGgCCaaGGGAGg -3'
miRNA:   3'- ggGGC-UUAGGUGCGU----UGCaGG--UCCUC- -5'
33296 3' -55 NC_007605.1 + 47381 0.69 0.86057
Target:  5'- aCCCCGAGU--GCGUGACG-CCAGGc- -3'
miRNA:   3'- -GGGGCUUAggUGCGUUGCaGGUCCuc -5'
33296 3' -55 NC_007605.1 + 46291 0.69 0.882234
Target:  5'- uUCUCGAGUCUACGaaGAC-UCCGGGGGc -3'
miRNA:   3'- -GGGGCUUAGGUGCg-UUGcAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 40392 0.7 0.820549
Target:  5'- cCCCUGccAGUCgGCGCGGgGUCcCAGGAc -3'
miRNA:   3'- -GGGGC--UUAGgUGCGUUgCAG-GUCCUc -5'
33296 3' -55 NC_007605.1 + 40029 0.67 0.934785
Target:  5'- gCCCUGGgggagggAUCgGCGgGGCugggGUCCAGGGGa -3'
miRNA:   3'- -GGGGCU-------UAGgUGCgUUG----CAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 35255 0.7 0.84827
Target:  5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3'
miRNA:   3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 35118 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 34764 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 34141 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 34060 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 32186 0.7 0.84827
Target:  5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3'
miRNA:   3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 32049 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 31695 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 31110 0.7 0.828915
Target:  5'- aCCCCGGG-CCACcCGGCGgagCCAGGc- -3'
miRNA:   3'- -GGGGCUUaGGUGcGUUGCa--GGUCCuc -5'
33296 3' -55 NC_007605.1 + 31072 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.