Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33296 | 3' | -55 | NC_007605.1 | + | 16705 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 16350 | 0.68 | 0.913988 |
Target: 5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3' miRNA: 3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 15728 | 0.66 | 0.956703 |
Target: 5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3' miRNA: 3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 15647 | 0.67 | 0.935272 |
Target: 5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3' miRNA: 3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 13773 | 0.7 | 0.84827 |
Target: 5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3' miRNA: 3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 13636 | 0.73 | 0.659717 |
Target: 5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3' miRNA: 3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 13281 | 0.68 | 0.913988 |
Target: 5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3' miRNA: 3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 12659 | 0.66 | 0.956703 |
Target: 5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3' miRNA: 3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 12578 | 0.67 | 0.935272 |
Target: 5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3' miRNA: 3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 10668 | 0.68 | 0.908089 |
Target: 5'- aCCaCG-GUCCAcccCGCccucaAGCGUCCGGGAGc -3' miRNA: 3'- gGG-GCuUAGGU---GCG-----UUGCAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 5495 | 0.72 | 0.696703 |
Target: 5'- gCCCCGGAggCCACGCAGCaugacagagcugguGgucgCCGGGAu -3' miRNA: 3'- -GGGGCUUa-GGUGCGUUG--------------Ca---GGUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 4419 | 0.66 | 0.960321 |
Target: 5'- uCCCUGGAUCUugccaucccCGCAACGcaccgcaaUCAGGAGa -3' miRNA: 3'- -GGGGCUUAGGu--------GCGUUGCa-------GGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 3879 | 0.66 | 0.963724 |
Target: 5'- --gCGuAGUCCGCcaGCGGCagGUCCAGGGGa -3' miRNA: 3'- gggGC-UUAGGUG--CGUUG--CAGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 2354 | 0.7 | 0.836295 |
Target: 5'- gCCCaucUCCACGCGaagcacguacgugGCGcCCAGGAGu -3' miRNA: 3'- gGGGcuuAGGUGCGU-------------UGCaGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 2068 | 0.67 | 0.93955 |
Target: 5'- gCCCCGggUCUaggccgaGCGCGgaGCGUgggUCAGaGAGu -3' miRNA: 3'- -GGGGCuuAGG-------UGCGU--UGCA---GGUC-CUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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