Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33296 | 3' | -55 | NC_007605.1 | + | 149961 | 0.73 | 0.66976 |
Target: 5'- gUCCUGAAUCCGCGCAGCcuGUUCAuaGAGa -3' miRNA: 3'- -GGGGCUUAGGUGCGUUG--CAGGUc-CUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 5495 | 0.72 | 0.696703 |
Target: 5'- gCCCCGGAggCCACGCAGCaugacagagcugguGgucgCCGGGAu -3' miRNA: 3'- -GGGGCUUa-GGUGCGUUG--------------Ca---GGUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 101558 | 0.71 | 0.757785 |
Target: 5'- gCCgCCGAGUUCAgGCGAaccaaGcCCAGGGGg -3' miRNA: 3'- -GG-GGCUUAGGUgCGUUg----CaGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 40392 | 0.7 | 0.820549 |
Target: 5'- cCCCUGccAGUCgGCGCGGgGUCcCAGGAc -3' miRNA: 3'- -GGGGC--UUAGgUGCGUUgCAG-GUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 76024 | 0.7 | 0.823916 |
Target: 5'- cCUCCaGAAcagcggcgcuacaacUCCACGCuGCGUCCAucGGAGc -3' miRNA: 3'- -GGGG-CUU---------------AGGUGCGuUGCAGGU--CCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 31110 | 0.7 | 0.828915 |
Target: 5'- aCCCCGGG-CCACcCGGCGgagCCAGGc- -3' miRNA: 3'- -GGGGCUUaGGUGcGUUGCa--GGUCCuc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 2354 | 0.7 | 0.836295 |
Target: 5'- gCCCaucUCCACGCGaagcacguacgugGCGcCCAGGAGu -3' miRNA: 3'- gGGGcuuAGGUGCGU-------------UGCaGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 54034 | 0.69 | 0.852941 |
Target: 5'- cCCUCGAggCCGCccuggcccggGCAGCGgCCGGGAa -3' miRNA: 3'- -GGGGCUuaGGUG----------CGUUGCaGGUCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 47381 | 0.69 | 0.86057 |
Target: 5'- aCCCCGAGU--GCGUGACG-CCAGGc- -3' miRNA: 3'- -GGGGCUUAggUGCGUUGCaGGUCCuc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 150332 | 0.69 | 0.863566 |
Target: 5'- aCCCCGGAggagcCCAUGCAgcacuaGCGUCCcggcgcucgucguucAGGAa -3' miRNA: 3'- -GGGGCUUa----GGUGCGU------UGCAGG---------------UCCUc -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 137896 | 0.69 | 0.875222 |
Target: 5'- cCUCCGggUCCACuGCAAUuacucUgCAGGGGa -3' miRNA: 3'- -GGGGCuuAGGUG-CGUUGc----AgGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 116889 | 0.69 | 0.882234 |
Target: 5'- gCCCGcGUCUACGUGGCGgu-GGGAGg -3' miRNA: 3'- gGGGCuUAGGUGCGUUGCaggUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 152644 | 0.68 | 0.895608 |
Target: 5'- cCCCCGggUCCAC-CGugGggacCCuGGuGg -3' miRNA: 3'- -GGGGCuuAGGUGcGUugCa---GGuCCuC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 150807 | 0.68 | 0.901961 |
Target: 5'- gCCCGGG-CCGCcCAcCGcCCGGGAGg -3' miRNA: 3'- gGGGCUUaGGUGcGUuGCaGGUCCUC- -5' |
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33296 | 3' | -55 | NC_007605.1 | + | 51673 | 1.1 | 0.004236 |
Target: 5'- cCCCCGAAUCCACGCAACGUCCAGGAGc -3' miRNA: 3'- -GGGGCUUAGGUGCGUUGCAGGUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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